https://github.com/czbiohub-sf/covid-host-classifier-code
Science Score: 13.0%
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Basic Info
- Host: GitHub
- Owner: czbiohub-sf
- License: mit
- Language: Jupyter Notebook
- Default Branch: master
- Size: 2 MB
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Created over 4 years ago
· Last pushed over 3 years ago
https://github.com/czbiohub-sf/Covid-Host-Classifier-Code/blob/master/
# Covid-Host-Classifier-Code This repo contains data and code for some of the analyses in the paper ["A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants."](https://journals.asm.org/doi/full/10.1128/msystems.00671-22) These analyses are: 1. Evaluation of 2-gene sets for predicting SARS-CoV-2 positivity using RNA-seq gene expression data from UCSF. 2. Idenitification of best-performing 2-gene sets for predicting SARS-CoV-2 positivity using UCSF data filtered based on rpM values, and evaluation of these 2-gene sets on an external dataset from a study in New York. 3. Evaluation of 2-gene sets on predicting SARS-CoV-2 positivity using local RT-PCR data. The analyses above correspond to the folders "Cleaned Unf Data", "Cleaned Ct Filtered Data", and "Cleaned PCR Data", respectively.
Owner
- Name: Chan Zuckerberg Biohub San Francisco
- Login: czbiohub-sf
- Kind: organization
- Location: San Francisco
- Website: https://www.czbiohub.org/sf/
- Repositories: 1
- Profile: https://github.com/czbiohub-sf