PypeIt

PypeIt: The Python Spectroscopic Data Reduction Pipeline - Published in JOSS (2020)

https://github.com/pypeit/pypeit

Science Score: 95.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 8 DOI reference(s) in README and JOSS metadata
✓
Academic publication links
Links to: arxiv.org, joss.theoj.org, zenodo.org
✓
Committers with academic emails
19 of 63 committers (30.2%) from academic institutions
○
Institutional organization owner
✓
JOSS paper metadata
Published in Journal of Open Source Software

Keywords from Contributors

astronomy mcmc

Scientific Fields

Mathematics Computer Science - 84% confidence

Artificial Intelligence and Machine Learning Computer Science - 83% confidence

Last synced: 4 months ago · JSON representation

Repository

The Python Spectroscopic Data Reduction Pipeline

Basic Info

Host: GitHub
Owner: pypeit
License: bsd-3-clause
Language: Python
Default Branch: release
Size: 1.34 GB

Statistics

Stars: 185
Watchers: 24
Forks: 118
Open Issues: 117
Releases: 28

Created over 10 years ago · Last pushed 4 months ago

Metadata Files

Readme Changelog License Citation

README.rst

.. |PyPI| image:: https://img.shields.io/pypi/v/pypeit?label=PyPI&logo=pypi&logoColor=white
    :target: https://pypi.org/project/pypeit/#history

.. |pypi_downloads| image:: https://img.shields.io/pypi/dm/pypeit
    :target: https://pypi.org/project/pypeit/#files

.. |License| image:: https://img.shields.io/github/license/pypeit/PypeIt
   :target: https://github.com/pypeit/PypeIt/blob/release/LICENSE.rst

.. |CITests| image:: https://github.com/pypeit/PypeIt/workflows/CI%20Tests/badge.svg
    :target: https://github.com/pypeit/PypeIt/actions?query=workflow%3A"CI+Tests"

.. |docs| image:: https://readthedocs.org/projects/pypeit/badge/?version=latest
    :target: https://pypeit.readthedocs.io/en/latest/

.. |DOI_latest| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3743493.svg
   :target: https://doi.org/10.5281/zenodo.3743493

.. |JOSS| image:: https://joss.theoj.org/papers/10.21105/joss.02308/status.svg
   :target: https://doi.org/10.21105/joss.02308

.. |arxiv| image:: https://img.shields.io/badge/arxiv-2005.06505-black
   :target: https://arxiv.org/abs/2005.06505

.. |astropy| image:: http://img.shields.io/badge/powered%20by-AstroPy-orange.svg?style=flat
    :target: http://www.astropy.org/

.. |forks| image:: https://img.shields.io/github/forks/pypeit/PypeIt?style=social
   :target: https://github.com/pypeit/PypeIt

.. |stars| image:: https://img.shields.io/github/stars/pypeit/PypeIt?style=social
   :target: https://github.com/pypeit/PypeIt

.. |github| image:: https://img.shields.io/badge/GitHub-PypeIt-brightgreen
   :target: https://github.com/pypeit/PypeIt


.. image:: https://raw.githubusercontent.com/pypeit/PypeIt/release/doc/_static/PypeIt_color_white_txt_black_background.png
    :target: https://github.com/pypeit/PypeIt
    :width: 485


PypeIt |forks| |stars|
======================

|github| |pypi| |pypi_downloads| |License|

|docs| |CITests|

|DOI_latest| |JOSS| |arxiv|

PypeIt is a Python package for semi-automated reduction of astronomical
spectroscopic data. Its algorithms build on decades-long development of previous
data reduction pipelines by the developers. The reduction procedure - including
a complete list of the input parameters and available functionality - is
provided by our `online documentation
`__.

PypeIt is designed to be used by both advanced spectroscopists with prior data
reduction expertise and astronomers with no prior experience of data reduction.
It is highly configurable and designed to be applied to any standard
slit-imaging spectrograph, including long-slit, multi-slit, as well as
cross-dispersed echelle spectra.  **The spectrographs that PypeIt can be used
with are listed** `here
`__.

Also note that `this link
`__
contains some useful information about reducing data
with certain instruments that you might also find helpful.

In addition to our primary code base, we maintain an extensive `development
suite `__ primarily used to
perform multiple layers of code testing, from basic unit tests to full
end-to-end tests of all our command-line scripts.  **If you are new to PypeIt,
you are encouraged to pull example data from the DevSuite for your instrument
when learning how to use the software.**

----

.. _community:

Community
+++++++++

As a project, PypeIt is committed to fostering a welcoming, diverse, and
inclusive community.  As a member of this community you are expected to read and
follow our `Code of Conduct
`__.

Along with our extensive `online documentation
`__, we encourage the PypeIt user
base to communicate via our `PypeIt Users Slack `__.
All are welcome to join using `this invitation link `__.

If you find a bug (particularly one that is experienced by others in the Users
Slack) or have a feature request, please `submit an issue
`__.

----

Citation
++++++++

If you use PypeIt in your research, please cite the following publications
(we provide the relevant `BibTeX entries
`__
for your convenience):

 - Prochaska et al. (2020, JOSS): `arXiv `__, `JOSS `__
 - Prochaska et al. (2020, Zenodo): `Zenodo `__

If there is no place to include the relevant citations in the text of
the publication, please include the following acknowledgement
(provided in latex and using the provided `BibTeX entries
`__):

.. code-block:: latex

    This research made use of \ttfamily{PypeIt},\footnote{\url{https://pypeit.readthedocs.io/en/latest/}}
    a Python package for semi-automated reduction of astronomical slit-based spectroscopy
    \citep{pypeit:joss_pub, pypeit:zenodo}.

----

Funding
+++++++

PypeIt receives direct funding from the following sources:

  * NASA ADAP (A20-0412, 20-1018)
  * W.M. Keck Observatory
  * University of California Observatories

We also rely on important in-kind contributions from individuals at
Caltech, the Multiple Mirror Observatory, and elsewhere.

----

Developers
++++++++++

PypeIt is an open-source, community developed package.  Astronomers are
encouraged to join the project and should review our `Code of Conduct
`__ and `Development
Guidelines `__.
We would also appreciate if you contact the lead developers (JXP, JFH) before
beginning development activities.

The following persons have contributed substantially to the
development of PypeIt.

* J Xavier Prochaska (JXP)
* Joseph F. Hennawi (JFH)
* Kyle B. Westfall
* Ryan J. Cooke
* Feige Wang
* Tiffany Hsyu
* Frederick B. Davies
* Emanuele Paolo Farina
* Debora Pelliccia
* James Reichwein
* Milan Roberson
* Timothy Pickering
* Timothy Ellsworth-Bowers
* Gregory Simonian
* Heather Martin

Owner

Name: PypeIt
Login: pypeit
Kind: organization

Repositories: 7
Profile: https://github.com/pypeit

JOSS Publication

PypeIt: The Python Spectroscopic Data Reduction Pipeline

Published

December 16, 2020

DOI

10.21105/joss.02308

Volume 5, Issue 56, Page 2308

Authors

J. Xavier Prochaska

University of California, Santa Cruz, Kavli Institute for the Physics and Mathematics of the Universe

Joseph F. Hennawi

University of California, Santa Barbara

Kyle B. Westfall

University of California Observatories

Ryan J. Cooke

Durham University, UK

Feige Wang

Kavli Institute for the Physics and Mathematics of the Universe, Steward Observatory, University of Arizona

Tiffany Hsyu

University of California, Santa Cruz

Frederick B. Davies

Kavli Institute for the Physics and Mathematics of the Universe, Lawrence Berkeley National Laboratory

Emanuele Paolo Farina

Kavli Institute for the Physics and Mathematics of the Universe, Max Planck Institut f\"{u}r Astrophysik

Debora Pelliccia

University of California Observatories

Editor

Dan Foreman-Mackey

GitHub Events

Total

Create event: 62
Release event: 4
Issues event: 55
Watch event: 20
Delete event: 66
Member event: 1
Issue comment event: 173
Push event: 492
Pull request event: 115
Pull request review comment event: 245
Pull request review event: 272
Fork event: 18

Last Year

Create event: 62
Release event: 4
Issues event: 55
Watch event: 20
Delete event: 66
Member event: 1
Issue comment event: 173
Push event: 493
Pull request event: 115
Pull request review comment event: 245
Pull request review event: 272
Fork event: 18

Committers

Last synced: 9 months ago

All Time

Total Commits: 13,267
Total Committers: 63
Avg Commits per committer: 210.587
Development Distribution Score (DDS): 0.742

Past Year

Commits: 377
Committers: 12
Avg Commits per committer: 31.417
Development Distribution Score (DDS): 0.687

Top Committers

Name	Email	Commits
profxj	x**r@u**g	3,427
joe	j**e@p**u	2,447
rcooke-ast	r**t@g**m	2,198
Kyle Westfall	w**l@u**g	1,785
Debora Pelliccia	d**a@u**g	810
Feige Wang	f**o@g**m	469
rcooke-ast	r**t@g**m	297
Timothy P. Ellsworth Bowers	t**s@l**u	263
profxj	x**r@u**g	204
EmAstro	e**a@g**m	176
T. E. Pickering	t**g@g**m	172
Milan Roberson	f**9@g**m	128
Adolfo Carvalho	a**o@g**m	128
Dusty Reichwein	d**y@u**g	114
Frederick Davies	d**s@m**e	92
thsyu	t**u@u**u	86
Dusty Reichwein	j**e@u**u	65
Frederick Davies	d**s@p**u	47
SunilSimha	s**5@g**m	40
Asher Wasserman	a**n@g**m	38
Tang Shenli	t**g@T**l	28
ShaneBechtel	s**l@y**m	22
Dave	d**s@i**s	21
suksien	h**n@y**y	20
Joseph Hennawi	j****i	19
Alexa Villaume	a**m@u**u	18
Dave	d**e@g**m	17
hnmartin	1****n	17
ntejos	n**s@g**m	17
Bradford Holden	b**n@g**m	16
and 33 more...

Committer Domains (Top 20 + Academic)

ucolick.org: 5 ucsc.edu: 4 physics.ucsb.edu: 2 mpia.de: 2 lowell.edu: 1 iac.es: 1 yahoo.com.my: 1 physics.harvard.edu: 1 qub.ac.uk: 1 resnet-10-245.resnet.ucsb.edu: 1 uw.edu: 1 hotmail.it: 1 strw.leidenuniv.nl: 1 berkeley.edu: 1 alunmni.ku.dk: 1 zestar.uio.no: 1 resnet-11-128.resnet.ucsb.edu: 1 resnet-188-73.resnet.ucsb.edu: 1 ucdavis.edu: 1 4angle.com: 1 nd.edu: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time

Total issues: 121
Total pull requests: 458
Average time to close issues: 3 months
Average time to close pull requests: 15 days
Total issue authors: 61
Total pull request authors: 28
Average comments per issue: 1.63
Average comments per pull request: 2.16
Merged pull requests: 394
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 39
Pull requests: 137
Average time to close issues: 26 days
Average time to close pull requests: 9 days
Issue authors: 21
Pull request authors: 18
Average comments per issue: 0.77
Average comments per pull request: 1.11
Merged pull requests: 96
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

rcooke-ast (15)
kbwestfall (13)
jhennawi (12)
tbowers7 (7)
debora-pe (5)
opkuhn (3)
profxj (3)
jasonpeng17 (2)
xiejuan-dot (2)
jhod0 (2)
orenir49 (2)
ddobie (2)
badpandabear (2)
fawkez (2)
Mao-PH (2)

Pull Request Authors

kbwestfall (104)
rcooke-ast (87)
debora-pe (67)
profxj (36)
tbowers7 (24)
badpandabear (23)
Adolfo1519 (19)
jhennawi (17)
freddavies (17)
ejeschke (9)
SunilSimha (8)
tepickering (8)
wmorgali (6)
Raindogjones (5)
jhod0 (4)

Top Labels

Issue Labels

bug (10) enhancement (9) development (5) docs (2) IFU (2)

Pull Request Labels

Packages

Total packages: 2
Total downloads:
- pypi 257 last-month

Total dependent packages: 3
(may contain duplicates)
Total dependent repositories: 4
(may contain duplicates)
Total versions: 59
Total maintainers: 2

pypi.org: pypeit

PypeIt Spectroscopic Reduction

Homepage: https://github.com/pypeit/PypeIt
Documentation: https://pypeit.readthedocs.io/
License: BSD-3
Latest release: 1.17.4
published 7 months ago

Versions: 43
Dependent Packages: 2
Dependent Repositories: 3
Downloads: 257 Last month

Rankings

Dependent packages count: 3.2%

Forks count: 4.7%

Stargazers count: 6.3%

Average: 7.0%

Dependent repos count: 8.9%

Downloads: 11.7%

Maintainers (2)

pypeit kbwestfall

Last synced: 4 months ago

conda-forge.org: pypeit

PypeIt is a Python package for semi-automated reduction of astronomical, spectroscopic data. Its algorithms build on decades-long development of previous data reduction pipelines by the developers. PypeIt is a set of commands designed to perform the reduction without any additional coding.

Homepage: https://github.com/pypeit/PypeIt
License: BSD-3-Clause
Latest release: 1.10.0
published over 3 years ago

Versions: 16
Dependent Packages: 1
Dependent Repositories: 1

Rankings

Forks count: 19.8%

Dependent repos count: 24.4%

Average: 26.1%

Dependent packages count: 29.0%

Stargazers count: 31.2%

Last synced: 4 months ago

Dependencies

.github/workflows/ci_cron.yml actions

actions/checkout v2 composite
actions/setup-python v2 composite

.github/workflows/ci_tests.yml actions

actions/checkout v2 composite
actions/checkout v1 composite
actions/setup-python v2 composite
codecov/codecov-action v1 composite

deprecated/requirements.txt pypi

IPython >=7.2.0
PyYAML >=5.1
QtPy >=1.9
astropy >=4.0
configobj >=5.0.6
extension-helpers >=0.1
ginga >=3.0
linetools >=0.3.dev2231
matplotlib >=3.1
numpy >=1.18.0
packaging >=19.0
requests >=2.23
scikit-learn >=0.20
scipy >=1.4

deprecated/requirements_doc.txt pypi

Sphinx >=3.0
sphinx-automodapi >=0.12
sphinx_rtd_theme >=0.5

deprecated/setup.py pypi

for *
if *
line.strip *

pypeit/scripts/setup.py pypi

pyproject.toml pypi

setup.py pypi

environment.yml conda

pip
python >=3.11,<3.14

PypeIt

Science Score: 95.0%

Keywords from Contributors

Scientific Fields

Repository

Basic Info

Statistics

Metadata Files

README.rst

Owner

JOSS Publication

PypeIt: The Python Spectroscopic Data Reduction Pipeline

Authors

Editor

Tags

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

pypi.org: pypeit

Rankings

Maintainers (2)

conda-forge.org: pypeit

Rankings

Dependencies