https://github.com/daducci/amico
Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
Science Score: 49.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 4 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
8 of 35 committers (22.9%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (10.0%) to scientific vocabulary
Keywords from Contributors
neuroimaging
diffusion-mri
registration
medical-imaging
tractometry
tractography
tracking
spherical-harmonics
self-supervised-learning
patch2self
Last synced: 6 months ago
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JSON representation
Repository
Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
Basic Info
- Host: GitHub
- Owner: daducci
- License: other
- Language: Cython
- Default Branch: master
- Size: 6 MB
Statistics
- Stars: 112
- Watchers: 18
- Forks: 64
- Open Issues: 13
- Releases: 10
Created over 11 years ago
· Last pushed 7 months ago
Metadata Files
Readme
Changelog
License
README.md
AMICO - Accelerated Microstructure Imaging via Convex Optimization
Implementation of the linear framework for Accelerated Microstructure Imaging via Convex Optimization (AMICO) described in (Daducci et al., 2015)
Documentation
The documentation, including the installation guide as well as a series of demos/tutorials to show how to use AMICO to fit different models to your data, can be found in the wiki.
Support
For questions, requesting assistance, suggesting enhancements or new ideas as well as for reporting bugs, please open an issue.
Owner
- Name: Alessandro Daducci
- Login: daducci
- Kind: user
- Location: Verona, Italy
- Company: University of Verona
- Website: http://www.di.univr.it/?ent=persona&id=4397
- Twitter: ADaducci
- Repositories: 10
- Profile: https://github.com/daducci
GitHub Events
Total
- Create event: 4
- Release event: 2
- Issues event: 8
- Watch event: 8
- Issue comment event: 11
- Push event: 3
- Gollum event: 1
- Pull request event: 3
- Fork event: 2
Last Year
- Create event: 4
- Release event: 2
- Issues event: 8
- Watch event: 8
- Issue comment event: 11
- Push event: 3
- Gollum event: 1
- Pull request event: 3
- Fork event: 2
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| nightwnvol | c****e@u****t | 84 |
| Alessandro Daducci | a****i@e****h | 61 |
| Alessandro Daducci | a****i@g****m | 44 |
| Alessandro Daducci | a****i@u****t | 42 |
| Mario Ocampo | o****o@g****m | 32 |
| ErickHernandezGutierrez | e****z@c****x | 23 |
| nightwnvol | n****4@h****t | 22 |
| David Romascano | d****o@e****h | 22 |
| frheault | f****t@u****e | 11 |
| Alessandro Daducci | d****i | 10 |
| Maxime Descoteaux | m****x@u****a | 6 |
| ketograph | k****h@g****m | 3 |
| Daisuke MATSUYOSHI | m****e@g****m | 3 |
| Samuel St-Jean | s****m@g****m | 2 |
| Chris Steele | s****c@g****m | 2 |
| Tom Wright | t****m@m****m | 2 |
| Thomas | k****h | 2 |
| arnaudbore | a****e@g****m | 2 |
| Ian Hinder | i****r@m****k | 1 |
| Josef Ling | j****g@c****u | 1 |
| Chris Hammill | c****l@g****m | 1 |
| Jean-Christophe Houde | j****e@g****m | 1 |
| Philip A Cook | c****a@m****u | 1 |
| Matt Cieslak | m****k@g****m | 1 |
| Kohske Takahashi | t****i@h****l | 1 |
| Marco Palombo | m****o@g****m | 1 |
| Alessandro Daducci | a****e@l****9 | 1 |
| full-Strix | m****0@g****m | 1 |
| Kohske Takahashi at Sumire | t****e@g****m | 1 |
| takahashi | t****i@r****l | 1 |
| and 5 more... | ||
Committer Domains (Top 20 + Academic)
usherbrooke.ca: 2
epfl.ch: 2
univr.it: 2
mpib-berlin.mpg.de: 1
mail.med.upenn.edu: 1
carson.mind.unm.edu: 1
manchester.ac.uk: 1
maladmin.com: 1
github.com: 1
hotmail.it: 1
cimat.mx: 1
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 96
- Total pull requests: 41
- Average time to close issues: 8 months
- Average time to close pull requests: 20 days
- Total issue authors: 69
- Total pull request authors: 15
- Average comments per issue: 4.32
- Average comments per pull request: 0.51
- Merged pull requests: 34
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 7
- Pull requests: 3
- Average time to close issues: 6 days
- Average time to close pull requests: about 21 hours
- Issue authors: 6
- Pull request authors: 2
- Average comments per issue: 1.14
- Average comments per pull request: 0.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- CallowBrainProject (6)
- ElChiriquiski (6)
- surendra116083 (4)
- yunfei920406 (3)
- mattcieslak (2)
- bertram0611 (2)
- kjobson-neuro (2)
- weberam2 (2)
- ezefarrher (2)
- cmeesters (2)
- BastienCagna (2)
- andebag (2)
- karkantar (2)
- barakovic (2)
- mblesac (2)
Pull Request Authors
- nightwnvol (16)
- daducci (8)
- MarioOcampo (4)
- ErickHernandezGutierrez (3)
- K0ki116 (2)
- jchoude (1)
- mattcieslak (1)
- pauldmccarthy (1)
- arnaudbore (1)
- fullbat (1)
- davidrs06 (1)
- mdesco (1)
- ianhinder (1)
- oceanites (1)
- frheault (1)
Top Labels
Issue Labels
help wanted (46)
question (10)
enhancement (10)
bug (8)
duplicate (4)
wontfix (1)
Pull Request Labels
enhancement (11)
bug (9)
invalid (1)
Packages
- Total packages: 1
-
Total downloads:
- pypi 1,705 last-month
- Total docker downloads: 227
- Total dependent packages: 3
- Total dependent repositories: 6
- Total versions: 26
- Total maintainers: 3
pypi.org: dmri-amico
Accelerated Microstructure Imaging via Convex Optimization (AMICO)
- Homepage: https://github.com/daducci/AMICO
- Documentation: https://github.com/daducci/AMICO/wiki
- License: Proprietary License
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Latest release: 2.1.0
published about 1 year ago
Rankings
Dependent packages count: 2.4%
Docker downloads count: 2.9%
Forks count: 5.4%
Average: 5.6%
Dependent repos count: 6.0%
Stargazers count: 7.5%
Downloads: 9.1%
Maintainers (3)
Last synced:
7 months ago
Dependencies
requirements.txt
pypi
- dipy >=1.0
- joblib >=1.0.1
- numpy >=1.12
- packaging *
- scipy >=1.0
- setuptools >=46.1
- spams >=2.6.5.2
- tqdm >=4.56.0
- wheel *
setup.py
pypi
- dipy >=1.0
- joblib >=1.0.1
- numpy >=1.12
- packaging *
- scipy >=1.0
- spams >=2.6.5.2
- tqdm >=4.56.0
- wheel *
.github/workflows/build_wheels.yml
actions
- actions/checkout v4.0.0 composite
- actions/upload-artifact v3.1.3 composite
- dawidd6/action-download-artifact v2.27.0 composite
- docker/setup-qemu-action v3.0.0 composite
- pypa/cibuildwheel v2.15.0 composite
.github/workflows/compile_openblas_linux.yml
actions
- actions/upload-artifact v3.1.3 composite
- docker/setup-qemu-action v3.0.0 composite
.github/workflows/compile_openblas_macos_x86_64.yml
actions
- actions/upload-artifact v3.1.3 composite
.github/workflows/macos_arm64_wheels.yml
actions
- actions/upload-artifact v3.1.3 composite
.github/workflows/publish_on_pypi.yml
actions
- dawidd6/action-download-artifact v2.27.0 composite
- pypa/gh-action-pypi-publish v1.8.10 composite
pyproject.toml
pypi