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https://github.com/dalmolingroup/orthoguide

A web application for evolutionary rooting of genes

https://github.com/dalmolingroup/orthoguide

Science Score: 39.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.2%) to scientific vocabulary

Keywords

bioinformatics evolution orthology rooting
Last synced: 5 months ago · JSON representation

Repository

A web application for evolutionary rooting of genes

Basic Info
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
bioinformatics evolution orthology rooting
Created 7 months ago · Last pushed 6 months ago
Metadata Files
Readme Changelog License

README.md

OrthoGuide Project

Welcome to the OrthoGuide project! This repository contains the full frontend application for OrthoGuide, a web tool for evolutionary rooting analysis based on GeneBridge results.

Repository Structure

The project is organized into two main directories:

  • db_creation/: Contains the R/bash code for creating the SQLite3 db used by the API

  • orthoguide_front/: Contains the frontend single-page application with SQLite-wasm built with Vue.js.

Serving the application

To serve the application in dev mode, run the following:

bash docker compose watch

The frontend is accessible through localhost:8080

Owner

  • Name: Dalmolin Systems Biology Group
  • Login: dalmolingroup
  • Kind: organization
  • Location: Natal, RN - Brazil

Research group in Systems Biology at UFRN

GitHub Events

Total
  • Issues event: 2
  • Delete event: 4
  • Push event: 18
  • Create event: 7
Last Year
  • Issues event: 2
  • Delete event: 4
  • Push event: 18
  • Create event: 7

Dependencies

.github/workflows/deploy.yml actions
  • actions/checkout v4 composite
  • actions/download-artifact v4 composite
  • actions/setup-node v4 composite
  • actions/upload-artifact v4 composite
  • bahmutov/npm-install v1 composite
  • peaceiris/actions-gh-pages v4 composite
db_creation/docker/genebridge/Dockerfile docker
  • community.wave.seqera.io/library/r-ape_r-dplyr_r-magrittr_r-stringi_pruned 8a10e051913dbb30 build
db_creation/docker/sqlite/Dockerfile docker
  • alpine latest build
docker-compose.yml docker
orthoguide_front/Dockerfile docker
  • node 20-alpine build
orthoguide_front/package-lock.json npm
  • 365 dependencies
orthoguide_front/package.json npm
  • @vitejs/plugin-vue ^6.0.0 development
  • @vue/test-utils ^2.4.6 development
  • jsdom ^26.1.0 development
  • prettier 3.5.3 development
  • vite ^7.0.0 development
  • vite-plugin-static-copy ^3.1.1 development
  • vite-plugin-vue-devtools ^7.7.7 development
  • vitest ^3.2.4 development
  • chart.js ^4.5.0
  • d3 ^7.9.0
  • datatables.net-dt ^2.3.2
  • datatables.net-vue3 ^3.0.4
  • sql.js ^1.13.0
  • vue ^3.5.17
  • vue-router ^4.5.1