MRI-NUFFT - Zenodo Release

Release for Zenodo

Scientific Software - Peer-reviewed - Python
Published by paquiteau 9 months ago

MRI-NUFFT - v1.2.1

What's Changed

• Clean signal gradient display by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/246
• Fix Lloyd's sampling coordinates by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/247
• fix(joss): Address #250 by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/251
• Update on conjugate gradient and its example by @alineyyy in https://github.com/mind-inria/mri-nufft/pull/252

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v1.2...v1.2.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 9 months ago

MRI-NUFFT - v1.2.0

What's Changed

• Add some extra features to Siemens reader. by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/233
• Display 3D trajectories, with a grid interface by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/193
• Fix CI by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/243
• Fix ci, round 2 by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/245

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v1.1.1...v1.1.2

Scientific Software - Peer-reviewed - Python
Published by chaithyagr 10 months ago

MRI-NUFFT - v1.1.1

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v1.1.0...v1.1.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 10 months ago

MRI-NUFFT - v1.1.0

What's Changed

• Simple unet training by @Lenoush in https://github.com/mind-inria/mri-nufft/pull/199
• HotFix for docs by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/207
• Fix example U Net learning by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/209
• Update joss by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/213
• fix: Off-resonance array backend checks. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/212
• Update some examples. by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/219
• Just a few formatting things by @ckolbPTB in https://github.com/mind-inria/mri-nufft/pull/225
• Densities, random walks & travelling salesman by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/206
• Clean documentation and add type hints by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/228
• Finally get right Orientation from raw data by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/230
• Fixes for normalization issues by @AsmaTANABEN in https://github.com/mind-inria/mri-nufft/pull/214
• Random sampling by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/220

New Contributors

• @ckolbPTB made their first contribution in https://github.com/mind-inria/mri-nufft/pull/225

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v1.0.0...v1.1.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 11 months ago

MRI-NUFFT - v1.0.0

What's Changed

• TURBINE & REPI examples, fixes and improvements by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/186
• Add support for v5.0 trajectories by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/188
• Enhance Fourier Corrected operator by @mcencini in https://github.com/mind-inria/mri-nufft/pull/180
• Fix density update for gpuNUFFT by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/190
• fix: A cupy array can be provided for smaps as well. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/198
• add Conjugate Gradient with Momentum by @Lenoush in https://github.com/mind-inria/mri-nufft/pull/185
• Generalize with_* decorators by @mcencini in https://github.com/mind-inria/mri-nufft/pull/194
• Clean CPU examples by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/196
• [feature] add subspace projection model. by @mcencini in https://github.com/mind-inria/mri-nufft/pull/201
• fix: use the (potentially) rescaled trajectory for update. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/204
• Paper for JOSS by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/200

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.11.0...v1.0.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 1 year ago

MRI-NUFFT - v0.11.0

What's Changed

• fix: upload-artifact v4 ccompatibility by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/172
• Add support for multicoil autodiff in absence of Smaps by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/175
• Some tweaks for stacked nufft by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/173
• Fix MaxRecursionDepth error, Memory leaks and move to CUDA12 by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/174
• Fix violation check rule by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/177
• Add TURBINE/REPI with EPI-based tools by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/137
• Adding a bunch of new examples by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/181
• 150 right shape by @Lenoush in https://github.com/mind-inria/mri-nufft/pull/161

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.10.0...v0.11.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

MRI-NUFFT - v0.10.0

What's Changed

• Add torch kbnufft support by @Lenoush in https://github.com/mind-inria/mri-nufft/pull/111
• Allow NSP reader to automatically choose Nyquist dwell times by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/154
• Twixtools and orientation matrix extraction by @mbertrait in https://github.com/mind-inria/mri-nufft/pull/157
• Revert siemens raw data reader to mapVBVD by @mbertrait in https://github.com/mind-inria/mri-nufft/pull/165
• Plugging a bunch of test holes back to CI by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/160
• Add average and fix bug for cartesian data by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/166
• Smaps update and prevent saving trajectory for autodiff by @AsmaTANABEN in https://github.com/mind-inria/mri-nufft/pull/156
• Have a trajectory learner example and reform the documentation build flow by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/167
• Update test-ci.yml by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/169
• fix: add unix time stand for unicity. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/171

New Contributors

• @mbertrait made their first contribution in https://github.com/mind-inria/mri-nufft/pull/157
• @AsmaTANABEN made their first contribution in https://github.com/mind-inria/mri-nufft/pull/156

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.9.1...v0.10.0

Scientific Software - Peer-reviewed - Python
Published by chaithyagr over 1 year ago

MRI-NUFFT - v0.9.1

What's Changed

• Update README.rst by @philouc in https://github.com/mind-inria/mri-nufft/pull/144
• Update README.rst by @philouc in https://github.com/mind-inria/mri-nufft/pull/143
• Update getting_started.rst by @philouc in https://github.com/mind-inria/mri-nufft/pull/145
• Update mrinufft_convention.rst by @philouc in https://github.com/mind-inria/mri-nufft/pull/146
• Update README.rst by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/148
• Debug doc by @philouc in https://github.com/mind-inria/mri-nufft/pull/149
• 3D radial trajectory bundle (clean) by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/115
• A major bug in NSP read trajectory implementation by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/85

New Contributors

• @philouc made their first contribution in https://github.com/mind-inria/mri-nufft/pull/144

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.9.0...v0.9.1

Scientific Software - Peer-reviewed - Python
Published by chaithyagr over 1 year ago

MRI-NUFFT - v0.9.0

Highlights

• update of points for gpuNUFFT, finufft and cufinufft (No need for creating new plans !)
• Autodifferentation with respect to sampling point (thanks @alineyyy !)

What's Changed

• fix: avoid copy when casting with astype. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/112
• Smaps estimation module in mri-nufft by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/90
• fix: numpy/cupy compatibility for stacked nufft. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/120
• Spiral patch by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/105
• Some fixes in Smaps blurr function and slice and contrast based stuff by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/119
• add mrinufft convention by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/121
• feat(ci): add cache capabilities. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/126
• Autodiff wrt to trajectory by @alineyyy in https://github.com/mind-inria/mri-nufft/pull/116
• Numpy2.0 by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/134
• Change density to density_compensators by @Lenoush in https://github.com/mind-inria/mri-nufft/pull/114
• add method == true in base.py by @Lenoush in https://github.com/mind-inria/mri-nufft/pull/130
• Add support for updating points with gpuNUFFT by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/133
• Update plan in time for cufinufft and finufft by @alineyyy in https://github.com/mind-inria/mri-nufft/pull/138
• Test multi-coils in test_autodiff by @alineyyy in https://github.com/mind-inria/mri-nufft/pull/139
• fix: xp array for stacked. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/141

New Contributors

• @alineyyy made their first contribution in https://github.com/mind-inria/mri-nufft/pull/116
• @Lenoush made their first contribution in https://github.com/mind-inria/mri-nufft/pull/114

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.8.0...v0.9.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

MRI-NUFFT - v0.8.0

TLDR: More trajectories, performance gains, and full pytorch support with autodiff !

What's Changed

• Add helical and annular shell trajectories by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/34
• Add Seiffert spiral and shell trajectories by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/36
• Trajectory display overhaul by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/37
• Add 3D wave caipi by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/38
• feat: use a very large coil dimension for 2D stacked NUFFT by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/39
• Testclean by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/43
• Better docs by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/40
• Expansion overhaul by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/41
• Update test-ci.yml by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/52
• feat: use enums by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/55
• Improve the display config by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/54
• Propeller by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/56
• Benchmark tweaks by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/62
• Density compensation by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/66
• Dispatch density methods in operators by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/68
• Some fixes for pipe density by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/75
• Doc improvements by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/74
• style: run black 24. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/79
• fix: robust voronoi estimation. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/78
• feat: cherry-pick torch and lipchitz. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/76
• Direct Torch and CUPY support for gpUNUFFT arrays by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/80
• feat: add batch support for gpunufft. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/81
• Test refactor by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/83
• Fibonacci patch by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/86
• fix #91 by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/92
• share a 2D nufft across Stacked Operators by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/87
• feat: add examples creating GIF of trajectories. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/93
• fix: broken link by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/94
• Add MRI-NUFFT scheme image by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/95
• Fix NDFT tests by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/96
• feat: start an autodiff poc. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/82
• Gpunufft data consistency by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/97
• Added siemens data reader and phase shifter by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/89

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.3.0...v0.8.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

MRI-NUFFT - v0.3.0

What's Changed

• Added support for _spread and _interp by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/9
• Tests by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/12
• minor fixes. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/16
• Add io by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/10
• add GPU CI by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/17
• style(trajectories): fix ruff and run black. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/23
• docs(example): improve rendering of docs. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/25
• doc(trajectory): better format for table. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/26
• Stacked nufft by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/24
• Add support for gpuNUFFT by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/18
• feat(stacked): add stacked from/to 3d trajectories functions. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/28
• Add 2D ring trajectory by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/27
• ci: simplify the CI and CD. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/30
• fix: missing extra argument. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/32
• perf: use scipy fft. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/31
• More stacked nufft tweaks. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/33
• Some fixes for stacked nufft by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/35
• Auto register Interfaces by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/29

New Contributors

• @chaithyagr made their first contribution in https://github.com/mind-inria/mri-nufft/pull/9
• @paquiteau made their first contribution in https://github.com/mind-inria/mri-nufft/pull/12
• @Daval-G made their first contribution in https://github.com/mind-inria/mri-nufft/pull/27

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.2.0...v0.3.0

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.7.0...v0.3.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

MRI-NUFFT - v0.7.0

What's Changed

• Test refactor by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/83
• Fibonacci patch by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/86
• fix #91 by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/92
• share a 2D nufft across Stacked Operators by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/87
• feat: add examples creating GIF of trajectories. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/93

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.6.1...v0.7.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

MRI-NUFFT - v0.6.1

What's Changed

• feat: add batch support for gpunufft. by @paquiteau and @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/81

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.6.0...v0.6.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

MRI-NUFFT - v0.6.0

What's Changed

• Direct Torch and CUPY support for gpUNUFFT arrays by @chaithyagr in https://github.com/mind-inria/mri-nufft/pull/80

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.5.0...v0.6.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

MRI-NUFFT - v0.5.0

TLDR: Numpy/Cupy/Pytorch are now supported for input and output array.

What's Changed

• style: run black 24. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/79
• fix: robust voronoi estimation. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/78
• feat: cherry-pick torch and lipchitz. by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/76

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.4.0...v0.5.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

MRI-NUFFT - v0.4.0

What's Changed

• Add helical and annular shell trajectories by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/34
• Add Seiffert spiral and shell trajectories by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/36
• Trajectory display overhaul by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/37
• Add 3D wave caipi by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/38
• feat: use a very large coil dimension for 2D stacked NUFFT by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/39
• Testclean by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/43
• Better docs by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/40
• Expansion overhaul by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/41
• Update test-ci.yml by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/52
• feat: use enums by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/55
• Improve the display config by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/54
• Propeller by @Daval-G in https://github.com/mind-inria/mri-nufft/pull/56
• Benchmark tweaks by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/62
• Density compensation by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/66
• Dispatch density methods in operators by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/68
• Some fixes for pipe density by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/75
• Doc improvements by @paquiteau in https://github.com/mind-inria/mri-nufft/pull/74

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.3.0...v0.4.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

MRI-NUFFT - v0.2.0

Added density compensator estimations

Scientific Software - Peer-reviewed - Python
Published by chaithyagr over 2 years ago

MRI-NUFFT - v0.1.0

Add the trajectory zoo and simple example to use them.

Full Changelog: https://github.com/mind-inria/mri-nufft/compare/v0.0.0...v0.1.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

MRI-NUFFT - v0.0.0

Initial Draft Release Full Changelog: https://github.com/mind-inria/mri-nufft/commits/v0.0.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago