https://github.com/damourchris/msb1013_computationalneuroscience
Simulation-Based Inference of Neuronal Models
https://github.com/damourchris/msb1013_computationalneuroscience
Science Score: 13.0%
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Low similarity (16.6%) to scientific vocabulary
Repository
Simulation-Based Inference of Neuronal Models
Basic Info
- Host: GitHub
- Owner: damourChris
- License: mit
- Language: Jupyter Notebook
- Default Branch: master
- Homepage: https://damourchris.github.io/MSB1013_ComputationalNeuroscience/
- Size: 43.2 MB
Statistics
- Stars: 3
- Watchers: 1
- Forks: 3
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Multi-layered neural input simulation-based inference
This project aims to infer the different layers that were given as input to a neuronal model. The output of the model is then transformed into a BOLD model. Finally, the SBI toolbox is used to infer the different simulation parameters.
Table of contents
Project
The project is divided intro three modules: 1. Neuron simulations, where the initial training data is generated 2. BOLD Signal, where the data from the neuron simulation is transformed into a BOLD signal 3. Neural Net inference, where a neural net is used to perform inference to extract to original neuron simulation parameters.
Installation
This project uses Python and pip. Go check them out if you don't have them locally installed.
sh
$ python --version
$ pip --version
To install the project, you can clone it locally and install the required packages:
sh
$ git clone https://github.com/damourChris/MSB1013_ComputationalNeuroscience.git
$ cd MSB1013_ComputationalNeuroscience
$ pip install -r requirements.txt
We recommend using a conda environment for managing the dependencies. If you don't have conda installed, you can get it from here. Once you have conda installed, create a new environment and install the required packages:
sh
$ conda create --name myenv
$ conda activate myenv
$ pip install -r requirements.txt
Contributing
This project originates from the MSB1013 - Computational Neuroscience course of 2023. The codebase is not under active development, however feel free to fork this repo and work on it. Pull request are warmly welcomed. Note: if you find some errors in the documentation, feel free to open up an issue or a PR.
License
The source code and documentation are released under the MIT License. See the LICENSE file for more details.
Owner
- Name: Christopher Damour
- Login: damourChris
- Kind: user
- Location: Maastricht
- Repositories: 1
- Profile: https://github.com/damourChris
My public student profile
GitHub Events
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- Delete event: 2
- Issue comment event: 1
- Push event: 1
- Pull request event: 3
- Create event: 1
Last Year
- Delete event: 2
- Issue comment event: 1
- Push event: 1
- Pull request event: 3
- Create event: 1
Issues and Pull Requests
Last synced: over 1 year ago
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- Total pull requests: 4
- Average time to close issues: N/A
- Average time to close pull requests: 2 days
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- Total pull request authors: 3
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 1
Past Year
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- Pull requests: 1
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- Average time to close pull requests: 9 days
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- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 1
Top Authors
Issue Authors
Pull Request Authors
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