https://github.com/danforthcenter/plantcv-tutorial-watershed
watershed tutorial
https://github.com/danforthcenter/plantcv-tutorial-watershed
Science Score: 39.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.6%) to scientific vocabulary
Repository
watershed tutorial
Basic Info
- Host: GitHub
- Owner: danforthcenter
- License: cc-by-4.0
- Language: Jupyter Notebook
- Default Branch: main
- Size: 13.6 MB
Statistics
- Stars: 2
- Watchers: 5
- Forks: 1
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Watershed Segmentation Tutorial
Check out our interactive tutorial! uses the analyze watershed segmentation function to roughly segment individual leaves. In this case, the number of objects reported from the analyze watershed function is a rough estimation of the number of leaves. The Watershed Segmentation Function is a PlantCV function based on code contributed by Suxing Liu, Arkansas State University. For more information see https://github.com/lsx1980/Leaf_count.
Tutorial tags/keywords
Watershed Segmentation, Leaf Count, Plant Leaf, Leaf Segmentation, arabidopsis, single plant
Citations
Gehan MA, Fahlgren N, Abbasi A, Berry JC, Callen ST, Chavez L, Doust AN, Feldman MJ, Gilbert KB, Hodge JG, Hoyer JS, Lin A, Liu S, Lizárraga C, Lorence A, Miller M, Platon E, Tessman M, Sax T. 2017. PlantCV v2: Image analysis software for high-throughput plant phenotyping. PeerJ 5:e4088. DOI: 10.7717/peerj.4088.
Owner
- Name: Donald Danforth Plant Science Center
- Login: danforthcenter
- Kind: organization
- Location: St. Louis, MO
- Website: https://danforthcenter.org
- Repositories: 97
- Profile: https://github.com/danforthcenter
Our Mission: Improve the Human Condition Through Plant Science
GitHub Events
Total
- Watch event: 1
- Delete event: 5
- Push event: 13
- Pull request event: 9
- Fork event: 1
- Create event: 3
Last Year
- Watch event: 1
- Delete event: 5
- Push event: 13
- Pull request event: 9
- Fork event: 1
- Create event: 3
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Malia Gehan | m****n@d****g | 5 |
| zeeuqsze | 1****e | 5 |
| Haley Schuhl | 4****l | 1 |
| Noah Fahlgren | n****n@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 2 years ago
All Time
- Total issues: 0
- Total pull requests: 5
- Average time to close issues: N/A
- Average time to close pull requests: about 17 hours
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 5
- Average time to close issues: N/A
- Average time to close pull requests: about 17 hours
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- zeeuqsze (6)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- ipympl *
- actions/checkout main composite
- actions/setup-python main composite