https://github.com/danforthcenter/plantcv-tutorial-vis-nir
plantcv-tutorial-vis-nir
Science Score: 26.0%
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○CITATION.cff file
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○DOI references
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○Scientific vocabulary similarity
Low similarity (8.7%) to scientific vocabulary
Repository
plantcv-tutorial-vis-nir
Basic Info
- Host: GitHub
- Owner: danforthcenter
- License: cc-by-4.0
- Language: Jupyter Notebook
- Default Branch: main
- Size: 24.8 MB
Statistics
- Stars: 0
- Watchers: 5
- Forks: 0
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
VIS-NIR Tutorial
For dual VIS/NIR workflows, a visible image is used to identify an image mask for the plant material. The get nir function is used to get the NIR image that matches the VIS image (must be in same folder, with similar naming scheme), then functions are used to size and place the VIS image mask over the NIR image. This allows two workflows to be done at once and also allows plant material to be identified in low-quality images. We do not recommend this approach if there is a lot of plant movement between capture of NIR and VIS images.
To run a VIS/NIR workflow over a single VIS image there are two required inputs:
Image: Images can be processed regardless of what type of VIS camera was used (high-throughput platform, digital camera, cell phone camera). Image processing will work with adjustments if images are well lit and free of background that is similar in color to plant material. Output directory: If debug mode is set to 'print' output images from each intermediate step are produced.
Tutorial tags/keywords
ROI, region of interest, RGB, Near-infrared,NIR analysis, single plant, Maize, threshold methods
Owner
- Name: Donald Danforth Plant Science Center
- Login: danforthcenter
- Kind: organization
- Location: St. Louis, MO
- Website: https://danforthcenter.org
- Repositories: 97
- Profile: https://github.com/danforthcenter
Our Mission: Improve the Human Condition Through Plant Science
GitHub Events
Total
- Issue comment event: 1
- Push event: 17
- Pull request event: 2
- Create event: 1
Last Year
- Issue comment event: 1
- Push event: 17
- Pull request event: 2
- Create event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| leowlima | l****a@d****g | 7 |
| Haley Schuhl | 4****l | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 2 years ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- joshqsumner (1)
- HaleySchuhl (1)