https://github.com/danielvartan/sqlr

🔍 System for Systematic Quantitative Literature Eeviews

https://github.com/danielvartan/sqlr

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • âś“
    CITATION.cff file
    Found CITATION.cff file
  • âś“
    codemeta.json file
    Found codemeta.json file
  • â—‹
    .zenodo.json file
  • âś“
    DOI references
    Found 2 DOI reference(s) in README
  • â—‹
    Academic publication links
  • â—‹
    Academic email domains
  • â—‹
    Institutional organization owner
  • â—‹
    JOSS paper metadata
  • â—‹
    Scientific vocabulary similarity
    Low similarity (18.0%) to scientific vocabulary

Keywords

evidence-synthesis r r-package rstats systematic-review
Last synced: 6 months ago · JSON representation ·

Repository

🔍 System for Systematic Quantitative Literature Eeviews

Basic Info
Statistics
  • Stars: 8
  • Watchers: 1
  • Forks: 0
  • Open Issues: 2
  • Releases: 0
Archived
Topics
evidence-synthesis r r-package rstats systematic-review
Created almost 5 years ago · Last pushed over 2 years ago
Metadata Files
Readme Contributing Funding License Code of conduct Citation Codemeta

README.Rmd

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

library(sqlr)
```

# sqlr


[![Project Status: WIP – Initial development is in progress, but there has not yet been a stable, usable release suitable for the public.](https://www.repostatus.org/badges/latest/wip.svg)](https://www.repostatus.org/#wip)
[![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
[![R-CMD-check](https://github.com/giperbio/sqlr/workflows/R-CMD-check/badge.svg)](https://github.com/giperbio/sqlr/actions)
[![Codecov test coverage](https://codecov.io/gh/giperbio/sqlr/branch/main/graph/badge.svg)](https://app.codecov.io/gh/giperbio/sqlr?branch=main)
[![License: MIT](https://img.shields.io/badge/license-MIT-green)](https://choosealicense.com/licenses/mit/)
[![Contributor Covenant](https://img.shields.io/badge/Contributor%20Covenant-v2.0%20adopted-ff69b4.svg)](https://giperbio.github.io/sqlr/CODE_OF_CONDUCT.html)


## Overview

`sqlr` is an R package that provides a system to produce systematic quantitative literature reviews, a systematic review method presented by Catherine Pickering and Jason Byrne in [2014](https://doi.org/10.1080/07294360.2013.841651). Its aim is to facilitate the work of PhD candidates and other early-career researchers with evidence synthesis and to improve reproducibility in research.

Learn more about systematic quantitative literature reviews [here](https://www.griffith.edu.au/griffith-sciences/school-environment-science/research/systematic-quantitative-literature-review).

## Installation

You can install `sqlr` with:

``` {r, eval = FALSE}
# install.packages("remotes")
remotes::install_github("giperbio/sqlr")
```

## Citation

If you use `sqlr` in your research, please consider citing it. We put a lot of work to build and maintain a free and open-source R package. You can find the citation below.

```{r}
citation("sqlr")
```

## Contributing

We welcome contributions, including bug reports.

Take a moment to review our [Guidelines for Contributing](https://giperbio.github.io/sqlr/CONTRIBUTING.html).


Become an `sqlr` supporter! Click [here](https://github.com/sponsors/danielvartan) to make a donation. Please indicate the `sqlr` package in your donation message.

Owner

  • Name: Daniel Vartanian
  • Login: danielvartan
  • Kind: user
  • Location: SĂŁo Paulo, Brazil
  • Company: @sustentarea

Academic. Passionate about #opendata and #openscience.

Citation (CITATION.cff)

# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.5.0
# See also: https://docs.ropensci.org/cffr/
# -----------------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "sqlr" in publications use:'
type: software
license: MIT
title: 'sqlr: A System for Systematic Quantitative Literature Reviews'
version: 0.0.0.9000
abstract: A system for systematic quantitative literature reviews.
authors:
- family-names: Vartanian
  given-names: Daniel
  email: danvartan@gmail.com
  orcid: https://orcid.org/0000-0001-7782-759X
preferred-citation:
  type: unpublished
  title: 'sqlr: a system for systematic quantitative literature reviews'
  authors:
  - family-names: Vartanian
    given-names: Daniel
    email: danvartan@gmail.com
    orcid: https://orcid.org/0000-0001-7782-759X
  year: '2023'
  url: https://giperbio.github.io/sqlr/
  notes: R package version 0.0.0.9000
repository-code: https://github.com/giperbio/sqlr/issues/
url: https://giperbio.github.io/sqlr/
contact:
- family-names: Vartanian
  given-names: Daniel
  email: danvartan@gmail.com
  orcid: https://orcid.org/0000-0001-7782-759X
references:
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  location:
    name: Vienna, Austria
  year: '2023'
  institution:
    name: R Foundation for Statistical Computing
  version: '>= 4.2'
- type: software
  title: checkmate
  abstract: 'checkmate: Fast and Versatile Argument Checks'
  notes: Imports
  url: https://mllg.github.io/checkmate/
  repository: https://CRAN.R-project.org/package=checkmate
  authors:
  - family-names: Lang
    given-names: Michel
    email: michellang@gmail.com
    orcid: https://orcid.org/0000-0001-9754-0393
  year: '2023'
  version: '>= 2.1.0'
- type: software
  title: cli
  abstract: 'cli: Helpers for Developing Command Line Interfaces'
  notes: Imports
  url: https://cli.r-lib.org
  repository: https://CRAN.R-project.org/package=cli
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  year: '2023'
  version: '>= 3.6.0'
- type: software
  title: dplyr
  abstract: 'dplyr: A Grammar of Data Manipulation'
  notes: Imports
  url: https://dplyr.tidyverse.org
  repository: https://CRAN.R-project.org/package=dplyr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: François
    given-names: Romain
    orcid: https://orcid.org/0000-0002-2444-4226
  - family-names: Henry
    given-names: Lionel
  - family-names: MĂĽller
    given-names: Kirill
    orcid: https://orcid.org/0000-0002-1416-3412
  - family-names: Vaughan
    given-names: Davis
    email: davis@posit.co
    orcid: https://orcid.org/0000-0003-4777-038X
  year: '2023'
  version: '>= 1.1.0'
- type: software
  title: googlesheets4
  abstract: 'googlesheets4: Access Google Sheets using the Sheets API V4'
  notes: Imports
  url: https://googlesheets4.tidyverse.org
  repository: https://CRAN.R-project.org/package=googlesheets4
  authors:
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@posit.co
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2023'
  version: '>= 1.0.1'
- type: software
  title: lifecycle
  abstract: 'lifecycle: Manage the Life Cycle of your Package Functions'
  notes: Imports
  url: https://lifecycle.r-lib.org/
  repository: https://CRAN.R-project.org/package=lifecycle
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@rstudio.com
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
    orcid: https://orcid.org/0000-0003-4757-117X
  year: '2023'
  version: '>= 1.0.3'
- type: software
  title: refstudio
  abstract: 'refstudio: Tools to Extract and Process Bibliographical References'
  notes: Imports
  url: https://giperbio.github.io/refstudio/
  authors:
  - family-names: Vartanian
    given-names: Daniel
    email: danvartan@gmail.com
    orcid: https://orcid.org/0000-0001-7782-759X
  year: '2023'
- type: software
  title: rlang
  abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
  notes: Imports
  url: https://rlang.r-lib.org
  repository: https://CRAN.R-project.org/package=rlang
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2023'
  version: '>= 1.0.6'
- type: software
  title: stringr
  abstract: 'stringr: Simple, Consistent Wrappers for Common String Operations'
  notes: Imports
  url: https://stringr.tidyverse.org
  repository: https://CRAN.R-project.org/package=stringr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2023'
  version: '>= 1.5.0'
- type: software
  title: rutils
  abstract: 'rutils: Utility Functions for R'
  notes: Imports
  url: https://danielvartan.github.io/rutils/
  authors:
  - family-names: Vartanian
    given-names: Daniel
    email: danvartan@gmail.com
    orcid: https://orcid.org/0000-0001-7782-759X
  year: '2023'
- type: software
  title: covr
  abstract: 'covr: Test Coverage for Packages'
  notes: Suggests
  url: https://covr.r-lib.org
  repository: https://CRAN.R-project.org/package=covr
  authors:
  - family-names: Hester
    given-names: Jim
    email: james.f.hester@gmail.com
  year: '2023'
  version: '>= 3.6.1'
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2023'
  version: '>= 1.42'
- type: software
  title: mockr
  abstract: 'mockr: Mocking in R'
  notes: Suggests
  url: https://krlmlr.github.io/mockr/
  repository: https://CRAN.R-project.org/package=mockr
  authors:
  - family-names: MĂĽller
    given-names: Kirill
    email: kirill@cynkra.com
  year: '2023'
  version: '>= 0.2.1'
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2023'
  version: '>= 2.20'
- type: software
  title: spelling
  abstract: 'spelling: Tools for Spell Checking in R'
  notes: Suggests
  url: https://docs.ropensci.org/spelling/
  repository: https://CRAN.R-project.org/package=spelling
  authors:
  - family-names: Ooms
    given-names: Jeroen
    email: jeroen@berkeley.edu
    orcid: https://orcid.org/0000-0002-4035-0289
  - family-names: Hester
    given-names: Jim
    email: james.hester@rstudio.com
  year: '2023'
  version: '>= 2.2'
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2023'
  version: '>= 3.1.6'
- type: software
  title: utils
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Suggests
  authors:
  - name: R Core Team
  location:
    name: Vienna, Austria
  year: '2023'
  institution:
    name: R Foundation for Statistical Computing
  version: '>= 4.2.0'
identifiers:
- type: url
  value: https://github.com/giperbio/sqlr/

CodeMeta (codemeta.json)

{
  "@context": "https://doi.org/10.5063/schema/codemeta-2.0",
  "@type": "SoftwareSourceCode",
  "identifier": "sqlr",
  "description": "A system for systematic quantitative literature reviews.",
  "name": "sqlr: A System for Systematic Quantitative Literature Reviews",
  "relatedLink": "https://giperbio.github.io/sqlr/",
  "codeRepository": "https://github.com/giperbio/sqlr/",
  "issueTracker": "https://github.com/giperbio/sqlr/issues/",
  "license": "https://spdx.org/licenses/MIT",
  "version": "0.0.0.9000",
  "programmingLanguage": {
    "@type": "ComputerLanguage",
    "name": "R",
    "url": "https://r-project.org"
  },
  "runtimePlatform": "R version 4.3.1 (2023-06-16 ucrt)",
  "author": [
    {
      "@type": "Person",
      "givenName": "Daniel",
      "familyName": "Vartanian",
      "email": "danvartan@gmail.com",
      "@id": "https://orcid.org/0000-0001-7782-759X"
    }
  ],
  "copyrightHolder": [
    {
      "@type": "Person",
      "givenName": "Daniel",
      "familyName": "Vartanian",
      "email": "danvartan@gmail.com",
      "@id": "https://orcid.org/0000-0001-7782-759X"
    }
  ],
  "maintainer": [
    {
      "@type": "Person",
      "givenName": "Daniel",
      "familyName": "Vartanian",
      "email": "danvartan@gmail.com",
      "@id": "https://orcid.org/0000-0001-7782-759X"
    }
  ],
  "softwareSuggestions": [
    {
      "@type": "SoftwareApplication",
      "identifier": "covr",
      "name": "covr",
      "version": ">= 3.6.1",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=covr"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "knitr",
      "name": "knitr",
      "version": ">= 1.42",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=knitr"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "mockr",
      "name": "mockr",
      "version": ">= 0.2.1",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=mockr"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "rmarkdown",
      "name": "rmarkdown",
      "version": ">= 2.20",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=rmarkdown"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "spelling",
      "name": "spelling",
      "version": ">= 2.2",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=spelling"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "testthat",
      "name": "testthat",
      "version": ">= 3.1.6",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=testthat"
    },
    {
      "@type": "SoftwareApplication",
      "identifier": "utils",
      "name": "utils",
      "version": ">= 4.2.0"
    }
  ],
  "softwareRequirements": {
    "1": {
      "@type": "SoftwareApplication",
      "identifier": "R",
      "name": "R",
      "version": ">= 4.2"
    },
    "2": {
      "@type": "SoftwareApplication",
      "identifier": "checkmate",
      "name": "checkmate",
      "version": ">= 2.1.0",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=checkmate"
    },
    "3": {
      "@type": "SoftwareApplication",
      "identifier": "cli",
      "name": "cli",
      "version": ">= 3.6.0",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=cli"
    },
    "4": {
      "@type": "SoftwareApplication",
      "identifier": "dplyr",
      "name": "dplyr",
      "version": ">= 1.1.0",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=dplyr"
    },
    "5": {
      "@type": "SoftwareApplication",
      "identifier": "googlesheets4",
      "name": "googlesheets4",
      "version": ">= 1.0.1",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=googlesheets4"
    },
    "6": {
      "@type": "SoftwareApplication",
      "identifier": "lifecycle",
      "name": "lifecycle",
      "version": ">= 1.0.3",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=lifecycle"
    },
    "7": {
      "@type": "SoftwareApplication",
      "identifier": "refstudio",
      "name": "refstudio",
      "sameAs": "https://github.com/danielvartan/refstudio"
    },
    "8": {
      "@type": "SoftwareApplication",
      "identifier": "rlang",
      "name": "rlang",
      "version": ">= 1.0.6",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=rlang"
    },
    "9": {
      "@type": "SoftwareApplication",
      "identifier": "stringr",
      "name": "stringr",
      "version": ">= 1.5.0",
      "provider": {
        "@id": "https://cran.r-project.org",
        "@type": "Organization",
        "name": "Comprehensive R Archive Network (CRAN)",
        "url": "https://cran.r-project.org"
      },
      "sameAs": "https://CRAN.R-project.org/package=stringr"
    },
    "10": {
      "@type": "SoftwareApplication",
      "identifier": "rutils",
      "name": "rutils",
      "sameAs": "https://github.com/danielvartan/rutils"
    },
    "SystemRequirements": null
  },
  "fileSize": "50586.367KB",
  "citation": [
    {
      "@type": "CreativeWork",
      "datePublished": "2023",
      "author": [
        {
          "@type": "Person",
          "givenName": "Daniel",
          "familyName": "Vartanian",
          "email": "danvartan@gmail.com",
          "@id": "https://orcid.org/0000-0001-7782-759X"
        }
      ],
      "name": "{sqlr}: a system for systematic quantitative literature reviews",
      "url": "https://giperbio.github.io/sqlr/",
      "description": "R package version 0.0.0.9000"
    }
  ],
  "releaseNotes": "https://github.com/giperbio/sqlr/blob/master/NEWS.md",
  "readme": "https://github.com/danielvartan/sqlr/blob/main/README.md",
  "contIntegration": [
    "https://github.com/giperbio/sqlr/actions",
    "https://app.codecov.io/gh/giperbio/sqlr?branch=main"
  ],
  "developmentStatus": [
    "https://www.repostatus.org/#wip",
    "https://lifecycle.r-lib.org/articles/stages.html#experimental"
  ],
  "keywords": [
    "r-package",
    "systematic-review",
    "evidence-synthesis",
    "r",
    "rstats"
  ]
}

GitHub Events

Total
Last Year

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 3
  • Total pull requests: 0
  • Average time to close issues: 6 days
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • danielvartan (3)
Pull Request Authors
Top Labels
Issue Labels
enhancement (2) documentation (1)
Pull Request Labels

Dependencies

.github/workflows/check-standard.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test-coverage.yaml actions
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • R >= 4.1 depends
  • checkmate >= 2.1.0 imports
  • cli >= 3.6.0 imports
  • dplyr >= 1.1.0 imports
  • googlesheets4 >= 1.0.1 imports
  • gutils * imports
  • lifecycle >= 1.0.3 imports
  • refstudio * imports
  • rlang >= 1.0.6 imports
  • stringr >= 1.5.0 imports
  • covr >= 3.6.1 suggests
  • knitr >= 1.42 suggests
  • mockr >= 0.2.1 suggests
  • rmarkdown >= 2.20 suggests
  • spelling >= 2.2 suggests
  • testthat >= 3.1.6 suggests
  • utils >= 4.1.0 suggests