Data

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Open Source Science

https://github.com/dankelley/dod

Download Oceanographic Data

https://github.com/dankelley/dod

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Download Oceanographic Data

Basic Info
Statistics
  • Stars: 0
  • Watchers: 2
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created almost 3 years ago · Last pushed 10 months ago
Metadata Files
Readme Changelog

README.Rmd 

---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
    collapse = TRUE,
    comment = "#>",
    fig.path = "man/figures/README-",
    out.width = "100%"
)
```

# dod


[![CRAN status](https://www.r-pkg.org/badges/version/dod)](https://CRAN.R-project.org/package=dod)
[![R-CMD-check](https://github.com/dankelley/dod/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/dankelley/dod/actions/workflows/R-CMD-check.yaml)


The goal of dod is to make it easier to download various types of oceanographic
data from common sources such as BATS, NOAA, MEDS, BBMP. Some similar functions
exist in the oce package, but the intention is to retire them as dod matures,
because building oce is difficult for some users, and CRAN policies dictate
against frequent updates.

## Installation

You can install the development version of dod from [GitHub](https://github.com/) with:

``` r
# install.packages("devtools")
devtools::install_github("dankelley/dod")
```

## Example

The following example shows how to (1) download an index of CTD data files
resulting from observations made as part of the BBMP program in the present
year and then (2) use functions in the oce package to read and plot the 
first CTD profile of year 2024.

```{r example}
library(dod)
library(oce)
# Note: cannot specify year=2025 because the URL is differently constructed
index <- dod.ctd.bbmp.index(year = "2024")
ctdFile <- dod.ctd.bbmp(year = index$year[1], ID = index$ID[1], direction = "DN")
# Use oce to read, summarize and plot the data.
ctd <- read.netcdf(ctdFile) |>
    oceRename() |>
    as.ctd()
# Plot some biochemistry variables
par(mfrow = c(2, 2))
plotProfile(ctd, "SA")
plotProfile(ctd, "CT")
plotProfile(ctd, "oxygen")
plotProfile(ctd, "chlorophyllA")
```

PS. This `README.md` file was created on `r Sys.Date()` by rendering the
`README.Rmd` file with `devtools::build_readme()`.

Owner

  • Name: Dan Kelley
  • Login: dankelley
  • Kind: user
  • Location: Halifax, NS, Canada
  • Company: Dalhousie University

Oceanographer, University Professor and former Senator (ORCID https://orcid.org/0000-0001-7808-5911)

GitHub Events

Total
  • Issues event: 30
  • Issue comment event: 32
  • Push event: 30
Last Year
  • Issues event: 30
  • Issue comment event: 32
  • Push event: 30

Committers

Last synced: over 2 years ago

All Time
  • Total Commits: 15
  • Total Committers: 1
  • Avg Commits per committer: 15.0
  • Development Distribution Score (DDS): 0.0
Past Year
  • Commits: 15
  • Committers: 1
  • Avg Commits per committer: 15.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
dankelley k****n@g****m 15

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 16
  • Total pull requests: 0
  • Average time to close issues: about 1 month
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 2.5
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 8
  • Pull requests: 0
  • Average time to close issues: 15 days
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 3.13
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • dankelley (27)
Pull Request Authors
Top Labels
Issue Labels
bug (13) enhancement (9) met (1) documentation (1)
Pull Request Labels

Dependencies

.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v3 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
DESCRIPTION cran
  • methods * imports
  • oce * imports
  • utils * imports
  • knitr * suggests
  • ncdf4 * suggests
  • ocedata * suggests
  • rmarkdown * suggests
  • testthat * suggests