https://github.com/databio/hub.bulker.io

Bulker registry

https://github.com/databio/hub.bulker.io

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
    2 of 9 committers (22.2%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (5.9%) to scientific vocabulary

Keywords from Contributors

bioinformatics bioinformatics-pipeline ngs pipeline-submission-engine reproducibility bioconductor-package
Last synced: 10 months ago · JSON representation

Repository

Bulker registry

Basic Info
  • Host: GitHub
  • Owner: databio
  • License: bsd-2-clause
  • Language: HTML
  • Default Branch: master
  • Homepage: http://hub.bulker.io
  • Size: 131 KB
Statistics
  • Stars: 5
  • Watchers: 14
  • Forks: 1
  • Open Issues: 3
  • Releases: 0
Created almost 7 years ago · Last pushed about 1 year ago
Metadata Files
Readme License

README.md

Bulker registry

Welcome to the bulker registry. Here, we host manifest files that describe computing environments for the bulker environment manager. The bulker registry is hosted on github pages. In the future, we envision the bulker registry as a full-featured RESTful API to share bulker environments.

Linking your bulker CLI to hub.bulker.io

You can link your bulker CLI to this registry by adding this line to your bulker config file:

yaml registry_url: https://hub.bulker.io

Or, equivalently, you can also link directly like this:

yaml registry_url: https://raw.githubusercontent.com/databio/hub.bulker.io/master/

Contributing a manifest

Write a manifest

First, you have to write a manifest yaml file. Consult the bulker docs on how to write a manifest.

Upload your manifest to the registry

After creating your manifest file, you can contribute it to this registry so that you and others can more easily load it with the bulker CLI. Name your manifest yaml file with the name of the manifest. For a tag, append an understore, so it's manifestname_tag.yaml. Manifests in the registry are divided into namespaces, which are represented as subfolders in this repository. So, place your manifest into an appropriate subfolder, and then open a pull request.

Once merged, you will be able to pull your manifest with bulker load namespace/manifestname:tag.

Owner

  • Name: Databio
  • Login: databio
  • Kind: organization
  • Location: University of Virginia

Solving problems in computational biology

GitHub Events

Total
  • Issues event: 1
  • Delete event: 1
  • Push event: 6
  • Pull request event: 6
  • Create event: 1
Last Year
  • Issues event: 1
  • Delete event: 1
  • Push event: 6
  • Pull request event: 6
  • Create event: 1

Committers

Last synced: 11 months ago

All Time
  • Total Commits: 190
  • Total Committers: 9
  • Avg Commits per committer: 21.111
  • Development Distribution Score (DDS): 0.411
Past Year
  • Commits: 9
  • Committers: 3
  • Avg Commits per committer: 3.0
  • Development Distribution Score (DDS): 0.556
Top Committers
Name Email Commits
nsheff n****f 112
jpsmith5 j****h@v****u 27
Levi Waldron l****h@g****m 23
Michal Stolarczyk s****3@g****m 10
Nathan LeRoy N****7@g****m 6
Donald Campbell 1****r 4
J Wokaty j****y 3
Jose E. Verdezoto Mosquera j****4@u****u 3
L Waldron l****n@w****l 2
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 11 months ago

All Time
  • Total issues: 7
  • Total pull requests: 19
  • Average time to close issues: 28 days
  • Average time to close pull requests: 9 days
  • Total issue authors: 4
  • Total pull request authors: 7
  • Average comments per issue: 2.14
  • Average comments per pull request: 1.63
  • Merged pull requests: 16
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 6
  • Average time to close issues: 4 months
  • Average time to close pull requests: 22 days
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 1.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • nsheff (4)
  • lwaldron (1)
  • lparsons (1)
  • stolarczyk (1)
Pull Request Authors
  • jwokaty (7)
  • lwaldron (4)
  • stolarczyk (3)
  • nleroy917 (2)
  • donaldcampbelljr (2)
  • nsheff (1)
  • joseverdezoto (1)
Top Labels
Issue Labels
bug (2) likely-solved (1)
Pull Request Labels