Data

Tools

Indexes

Applications

Experiments

Open Source Science

Recent Releases of https://github.com/databio/pypiper

https://github.com/databio/pypiper - v0.14.4

[0.14.4] -- 2025-02-25

Changed

  • Fixed warnings for Python >3.12
  • Updated version of Python to 3.13 in pytests

- Python
Published by donaldcampbelljr over 1 year ago

https://github.com/databio/pypiper - v0.14.3

[0.14.3] -- 2024-10-02

Changed

  • bump requirements to require pipestat>=0.11.0

- Python
Published by donaldcampbelljr over 1 year ago

https://github.com/databio/pypiper - v0.14.2

[0.14.2] -- 2024-05-07

Changed

- Python
Published by donaldcampbelljr about 2 years ago

https://github.com/databio/pypiper - v0.14.1

[0.14.1] -- 2024-04-19

Changed

  • remove pipestatprojectname from PipelineManager parameters
  • refactor pipestatsamplename to pipestatrecordidentifier in PipelineManager parameters
  • update requirements for pipestat 0.9.0, ubiquerg 0.8.0, and yacman 0.9.3
  • set force_overwrite to default to true, Issue #209

- Python
Published by donaldcampbelljr about 2 years ago

https://github.com/databio/pypiper - v0.14.0

Pypiper v0.14.0

[0.14.0] -- 2023-12-22

Changed

  • refactor for pipestat v0.6.0 release
  • drop python 2.7
  • updated requirements
  • changed messageraw to be a valuedict when reporting to conform to pipestat
  • ### Fixed
  • fixed #196 and #197
  • ### Added
  • added force_overwrite to report_result and report_object
  • added pipestatpipelinetype, defaulting to sample-level

- Python
Published by donaldcampbelljr over 2 years ago

https://github.com/databio/pypiper - v0.14.0a2

v0.14.0a2

- Python
Published by donaldcampbelljr over 2 years ago

https://github.com/databio/pypiper - v0.14.0a1

v0.14.0a1

- Python
Published by donaldcampbelljr over 2 years ago

https://github.com/databio/pypiper - v0.13.3a1

v0.13.3a1

- Python
Published by donaldcampbelljr over 2 years ago

https://github.com/databio/pypiper - v0.13.2

[0.13.2] -- 2023-08-02

Fixed

  • fixed self.new_start overriding checkpoints.

- Python
Published by donaldcampbelljr almost 3 years ago

https://github.com/databio/pypiper - v0.13.1

  • added safewritetofile back into pypiper for Pepatac backwards compatibility

- Python
Published by donaldcampbelljr almost 3 years ago

https://github.com/databio/pypiper - v0.13.0

-Added support for pipestat

- Python
Published by donaldcampbelljr almost 3 years ago

https://github.com/databio/pypiper - v0.12.3

Release version 0.12.3

- Python
Published by nsheff over 4 years ago

https://github.com/databio/pypiper - v0.12.2

Release version 0.12.2

- Python
Published by nsheff over 4 years ago

https://github.com/databio/pypiper - v0.12.1

Release version 0.12.1

- Python
Published by nsheff almost 7 years ago

https://github.com/databio/pypiper - v0.12.0

Release version 0.12.0

- Python
Published by nsheff almost 7 years ago

https://github.com/databio/pypiper - v0.11.3

For updates see docs/changelog.md.

- Python
Published by vreuter almost 7 years ago

https://github.com/databio/pypiper - v0.11.2

For updates see docs/changelog.md.

- Python
Published by vreuter almost 7 years ago

https://github.com/databio/pypiper - v0.11.1

Elevates attmap version dependence to incorporate a fix.

- Python
Published by vreuter about 7 years ago

https://github.com/databio/pypiper - v0.11.0

Release version 0.11.0

- Python
Published by nsheff about 7 years ago

https://github.com/databio/pypiper - v0.10.0

Release v0.10.0

- Python
Published by nsheff about 7 years ago

https://github.com/databio/pypiper - v0.9.4

Release version 0.9.4

- Python
Published by vreuter over 7 years ago

https://github.com/databio/pypiper - v0.9.3

Release version 0.9.3

- Python
Published by vreuter over 7 years ago

https://github.com/databio/pypiper - v0.9.2

Release version 0.9.2

- Python
Published by vreuter over 7 years ago

https://github.com/databio/pypiper - v0.9.1

Release version 0.9.1

- Python
Published by nsheff over 7 years ago

https://github.com/databio/pypiper - v0.9.0

Release version 0.9.0

- Python
Published by nsheff over 7 years ago

https://github.com/databio/pypiper - pypiper v0.8

First release on pypi. You can install with:

pip install piper

or pip install https://github.com/databio/pypiper/zipball/v0.8

- Python
Published by nsheff almost 8 years ago

https://github.com/databio/pypiper - v0.7.2

Release version 0.7.2

- Python
Published by nsheff almost 8 years ago

https://github.com/databio/pypiper - pypiper v0.7

pip install https://github.com/databio/pypiper/zipball/v0.7

For a list of changes, see the CHANGELOG

- Python
Published by vreuter over 8 years ago

https://github.com/databio/pypiper - pypiper v0.6

pip install https://github.com/epigen/pypiper/zipball/v0.6

For a list of changes, see the CHANGELOG

- Python
Published by nsheff almost 9 years ago

https://github.com/databio/pypiper - pypiper v0.5

pip install https://github.com/epigen/pypiper/zipball/v0.5

For a list of changes, see the CHANGELOG

- Python
Published by nsheff almost 9 years ago

https://github.com/databio/pypiper - pypiper 0.5 release candidate 2

pip install https://github.com/epigen/pypiper/zipball/v0.5-rc2

- Python
Published by nsheff almost 9 years ago

https://github.com/databio/pypiper - pypiper 0.5 release candidate 1

Install with: pip install https://github.com/epigen/pypiper/zipball/v0.5-rc1

See changelog for release notes

- Python
Published by nsheff almost 9 years ago

https://github.com/databio/pypiper - pypiper v0.4

Install with:

pip install https://github.com/epigen/pypiper/zipball/v0.4

- Python
Published by nsheff about 9 years ago