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Recent Releases of https://github.com/databio/pepatac

https://github.com/databio/pepatac - v0.12.4

[0.12.4] -- 2025-03-24

  • fix for issue 310

- Python
Published by donaldcampbelljr about 1 year ago

https://github.com/databio/pepatac - v0.12.3

[0.12.3] -- 2025-03-05

  • Bump rust-gtars to v0.2.4, looper to 2.0.1, ubiquerg to 0.8.1

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Published by donaldcampbelljr about 1 year ago

https://github.com/databio/pepatac - v0.12.2

[0.12.2] -- 2025-02-13

  • Bump rust-gtars to v0.2.1: https://anaconda.org/bioconda/rust-gtars

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Published by donaldcampbelljr about 1 year ago

https://github.com/databio/pepatac - v0.12.1

[0.12.1] -- 2025-02-10

  • Bump pipestat version to fix this issue: https://github.com/pepkit/pipestat/issues/215

- Python
Published by donaldcampbelljr about 1 year ago

https://github.com/databio/pepatac - v0.12.0

[0.12.0] -- 2025-01-16

  • Remove containers from build and docs (docker and singularity)
  • update native install and bulker install docs
  • update to the newest versions of Looper (2.0.0), Pipestat (0.12.0), Pypiper (piper == 0.14.3)
  • update bowtie2, bedtools, fastqc, pigz versions.
  • replace bamSitesToWig step with gtars uniwig.

- Python
Published by donaldcampbelljr over 1 year ago

https://github.com/databio/pepatac - v0.11.3

[0.11.3] -- 2024-06-05

Changed

  • Pin Pipestat (pipestat==0.6.0), Looper (looper==1.6.0), and Pypiper (piper==0.14.0) versions to ensure compatibility

- Python
Published by donaldcampbelljr almost 2 years ago

https://github.com/databio/pepatac - v0.11.2

[0.11.2] -- 2024-01-22

Fixed

  • fix fastqc path Issue #268

- Python
Published by donaldcampbelljr over 2 years ago

https://github.com/databio/pepatac - v0.11.1

[0.11.1] -- 2024-01-17

Fixed

  • changed PEPATACr.R to use lapply instead of sapply when converting yaml to data.table object

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Published by donaldcampbelljr over 2 years ago

https://github.com/databio/pepatac - v0.11.0

[0.11.0] -- 2023-12-22

Fixed

  • adjusted requirements and docs for Looper 1.6.0, Pipestat v0.6.0, and Pypiper 0.14.0

Changed

  • pipeline uses MACS3 instead of MACS2
  • output schema is now a pipestat compatible JSON Schema
  • collator now outputs with record_identifier name summary

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Published by donaldcampbelljr over 2 years ago

https://github.com/databio/pepatac - v0.10.5

  • update looper requirements to v1.4.2

- Python
Published by donaldcampbelljr almost 3 years ago

https://github.com/databio/pepatac - v0.10.4

  • adjusted requirements for Looper (1.4.1 and above) and Eido (0.2.0 and above)

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Published by donaldcampbelljr almost 3 years ago

https://github.com/databio/pepatac - v0.10.3

See CHANGELOG.md for release notes.

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Published by jpsmith5 over 4 years ago

https://github.com/databio/pepatac - v0.10.2

See CHANGELOG.md for release notes.

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Published by jpsmith5 over 4 years ago

https://github.com/databio/pepatac - v0.10.1

See CHANGELOG.md for release notes.

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Published by jpsmith5 over 4 years ago

https://github.com/databio/pepatac - v0.10.0

See CHANGELOG.md for release notes.

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Published by jpsmith5 almost 5 years ago

https://github.com/databio/pepatac - v0.9.16

See CHANGELOG.md for release notes.

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Published by jpsmith5 almost 5 years ago

https://github.com/databio/pepatac - v0.9.15

See CHANGELOG.md for release notes.

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Published by jpsmith5 about 5 years ago

https://github.com/databio/pepatac - v0.9.14

See CHANGELOG.md for release notes.

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Published by jpsmith5 over 5 years ago

https://github.com/databio/pepatac - v0.9.13

See CHANGELOG.md for release notes.

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Published by jpsmith5 over 5 years ago

https://github.com/databio/pepatac - v0.9.12

See CHANGELOG.md for release notes.

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Published by jpsmith5 over 5 years ago

https://github.com/databio/pepatac - v0.9.10

See CHANGELOG.md for release notes.

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Published by jpsmith5 over 5 years ago

https://github.com/databio/pepatac - v0.9.9

See CHANGELOG.md for release notes.

- Python
Published by jpsmith5 over 5 years ago

https://github.com/databio/pepatac - v0.9.8

See CHANGELOG.md for release notes.

- Python
Published by jpsmith5 over 5 years ago

https://github.com/databio/pepatac - v0.9.7

See CHANGELOG.md for release notes.

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Published by jpsmith5 over 5 years ago

https://github.com/databio/pepatac - v0.9.6

See CHANGELOG.md for release notes.

- Python
Published by jpsmith5 over 5 years ago

https://github.com/databio/pepatac - v0.9.5

See CHANGELOG.md for release notes.

- Python
Published by jpsmith5 over 5 years ago

https://github.com/databio/pepatac - v0.9.4

See CHANGELOG.md for release notes.

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Published by jpsmith5 over 5 years ago

https://github.com/databio/pepatac - v0.9.3

See CHANGELOG.md for release notes.

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Published by jpsmith5 almost 6 years ago

https://github.com/databio/pepatac - v0.9.2

See CHANGELOG.md for release notes.

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Published by jpsmith5 almost 6 years ago

https://github.com/databio/pepatac - v0.9.1

See CHANGELOG.md for release notes.

- Python
Published by jpsmith5 almost 6 years ago

https://github.com/databio/pepatac - v0.9.0

See CHANGELOG.md for release notes.

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Published by jpsmith5 almost 6 years ago

https://github.com/databio/pepatac - v0.8.7

Release version 0.8.7

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Published by nsheff about 6 years ago

https://github.com/databio/pepatac - v0.8.6

See CHANGELOG.md for release notes.

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Published by jpsmith5 about 7 years ago

https://github.com/databio/pepatac - v0.8.5

See CHANGELOG.md for release notes.

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Published by jpsmith5 about 7 years ago

https://github.com/databio/pepatac - v0.8.4

See CHANGELOG.md for release notes.

- Python
Published by jpsmith5 over 7 years ago

https://github.com/databio/pepatac - v0.8.3

See CHANGELOG.md for release notes.

- Python
Published by jpsmith5 over 7 years ago

https://github.com/databio/pepatac - v0.8.2

See CHANGELOG.md for release notes.

- Python
Published by jpsmith5 over 7 years ago

https://github.com/databio/pepatac -

See CHANGELOG.md for release notes.

- Python
Published by jpsmith5 over 7 years ago

https://github.com/databio/pepatac - v0.8.0

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Published by jpsmith5 over 7 years ago

https://github.com/databio/pepatac - pepatac v0.7.0

See CHANGELOG.md for release notes.

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Published by nsheff almost 8 years ago

https://github.com/databio/pepatac - ATACseq pipeline v0.6.1

See CHANGELOG.md for release notes.

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Published by nsheff over 8 years ago

https://github.com/databio/pepatac - ATACseq pipeline v0.6

See CHANGELOG.md for release notes.

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Published by nsheff over 8 years ago

https://github.com/databio/pepatac - ATACseq pipeline v0.5

See CHANGELOG.md for release notes.

- Python
Published by nsheff over 8 years ago

https://github.com/databio/pepatac - ATACseq pipeline v0.4

See CHANGELOG.md for release notes.

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Published by nsheff almost 9 years ago

https://github.com/databio/pepatac - ATACseq pipeline v0.3

See CHANGELOG.md for release notes.

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Published by nsheff almost 9 years ago

https://github.com/databio/pepatac - ATACseq pipeline v0.2

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Published by nsheff about 9 years ago

https://github.com/databio/pepatac - ATACseq pipeline v0.1

Here's the first stable release of the pypiper ATAC-seq pipeline.

- Python
Published by nsheff about 9 years ago