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Open Source Science

https://github.com/databio/schema.databio.org

Repository of JSON-schemas

https://github.com/databio/schema.databio.org

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Repository of JSON-schemas

Basic Info
  • Host: GitHub
  • Owner: databio
  • License: bsd-2-clause
  • Language: JavaScript
  • Default Branch: master
  • Homepage: http://schema.databio.org
  • Size: 18.7 MB
Statistics
  • Stars: 2
  • Watchers: 17
  • Forks: 1
  • Open Issues: 3
  • Releases: 0
Created over 6 years ago · Last pushed almost 2 years ago
Metadata Files
Readme License

README.md

schema.databio.org

Welcome to the databio schema registry. This repository holds schemas that are then hosted using simple static API on GitHub pages. You can browse the API at https://schema.databio.org/. To get a specific schema, construct a URL like: https://schema.databio.org/{namspace}/{schema}.yaml -- for example, https://schema.databio.org/pep/2.0.0.yaml would give you the file found in this repository under schemas/pep/2.0.0.yaml.

Contributing a schema

Write a schema

First, you have to write a schema yaml file. It should follow json-schema format.

Upload your schema

After creating your schema file, you can contribute it to this repository so that you and others can more easily load it. Name your schema yaml file with the name of the schema. Schemas in the registry are divided into namespaces, which are represented as subfolders in this repository. So, place your schema into an appropriate subfolder, and then open a pull request.

Development guide

The front-end is built in React, using vite. Clone the repository and then start a development server with:

npm run dev

Preparing the inputs

You need to run index_contents.py will create all the API endpoints and copy the schemas themselves into /public, so they will be served by React. This will be done by the github action for the deployed verison. For testing locally, you'll need to run it yourself. These resulting files are not checked into git since they are generated from the source schemas found in the /schemas subfolder.

Owner

  • Name: Databio
  • Login: databio
  • Kind: organization
  • Location: University of Virginia

Solving problems in computational biology

GitHub Events

Total
Last Year

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 5
  • Total pull requests: 5
  • Average time to close issues: about 1 year
  • Average time to close pull requests: 4 days
  • Total issue authors: 3
  • Total pull request authors: 4
  • Average comments per issue: 1.6
  • Average comments per pull request: 0.8
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: 5 days
  • Issue authors: 0
  • Pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • nsheff (3)
  • khoroshevskyi (1)
  • stolarczyk (1)
Pull Request Authors
  • donaldcampbelljr (4)
  • saanikat (2)
  • khoroshevskyi (2)
  • joseverdezoto (1)
Top Labels
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Dependencies

package-lock.json npm
  • 340 dependencies
package.json npm
  • @types/js-yaml ^4.0.5 development
  • @types/react ^18.2.15 development
  • @types/react-dom ^18.2.7 development
  • @types/react-syntax-highlighter ^15.5.7 development
  • @typescript-eslint/eslint-plugin ^6.0.0 development
  • @typescript-eslint/parser ^6.0.0 development
  • @vitejs/plugin-react ^4.0.3 development
  • eslint ^8.45.0 development
  • eslint-plugin-react-hooks ^4.6.0 development
  • eslint-plugin-react-refresh ^0.4.3 development
  • gh-pages ^5.0.0 development
  • typescript ^5.0.2 development
  • vite ^4.4.5 development
  • js-yaml ^4.1.0
  • react ^18.2.0
  • react-bootstrap ^2.8.0
  • react-dom ^18.2.0
  • react-router-dom ^6.14.2
  • react-select ^5.7.4
  • react-syntax-highlighter ^15.5.0
requirements.txt pypi
  • PyYAML *
.github/workflows/gh-pages-deployment.yml actions
  • actions/checkout v4 composite
  • actions/deploy-pages v4 composite
  • actions/upload-pages-artifact v3 composite