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dimi-lab.github.io

Data science and Informatics for Multiomics Integration

https://github.com/dimi-lab/dimi-lab.github.io

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.8%) to scientific vocabulary

Keywords

bioinformatics data-science dataanalysis multiomics spatialomics
Last synced: 4 months ago · JSON representation ·

Repository

Data science and Informatics for Multiomics Integration

Basic Info
  • Host: GitHub
  • Owner: dimi-lab
  • License: bsd-3-clause
  • Language: HTML
  • Default Branch: main
  • Homepage: https://dimi-lab.github.io
  • Size: 65.8 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 3
  • Open Issues: 2
  • Releases: 0
Topics
bioinformatics data-science dataanalysis multiomics spatialomics
Created about 2 years ago · Last pushed 6 months ago
Metadata Files
Readme Changelog License Citation

README.md

dimi-lab.github.io 🚀

This is the source code to generate the webpages for our lab. Site map: mermaid graph TD; MainPage-->Research; MainPage-->Projects; MainPage-->Team; MainPage-->News; MainPage-->Contact;

How to make updates

This website is built with Lab Website Template. The official website has a tutorial Here to show you how to make changes to the content. Basically, you need to set up an environment (Mac is recommended), and then follow these steps: 1. Clone this repo to your computer and switch to the appropriate branch. 2. Edit the cloned site on your computer with your favorite text/code editor. 3. Commit and push the changes. 4. The owner of this repo will review and merge your updates, then build and deploy the updated version. Below is how you can modify specific subpages

Update Main page

Follow the examples within this file ./dimi-lab.github.io/index.md

Update Research

Follow the examples within this folder ./dimi-lab.github.io/research

Update Projects

Follow the examples within this file ./dimi-lab.github.io/_data/projects.yaml

Update Team

Follow the examples within this folder ./dimi-lab.github.io/_members

Update News

Follow the examples within this folder ./dimi-lab.github.io/_posts

Update Contact

Follow the examples within this file ./dimi-lab.github.io/contact/index.md

Other details

Add your publications to the list

The publication list is shown in Main and Research page. The easiest way to add your publications to the publication list is to add your ORCID to this .yaml file, ./dimi-lab.github.io/_data/orcid.yaml The GitHub Pages bot will automatically fetch your publications online and add to "_data/citations.yaml". So, please don't edit this "citations.yaml" directly, as your modifications will be overwritten in no time.

If you are interested in how this happens, please read python code in "./dimi-lab.github.io/_cite".

Modify some CSS style (advanced user only)

The CSS style is defined in this folder ./dimi-lab.github.io/_styles To locate which line in which file you should modify, you may need to switch Chrome to development mode to check which CSS style is taking effect.

Acknowledgement

The website is built with Lab Website Template

Owner

  • Name: DIMI lab
  • Login: dimi-lab
  • Kind: organization
  • Location: United States of America

Data science and Informatics for Multiomics Integration

Citation (CITATION.cff) 

# citation metadata for the template itself

title: "Lab Website Template"
version: 1.1.5
date-released: 2023-05-19
url: "https://github.com/greenelab/lab-website-template"
authors:
  - family-names: "Rubinetti"
    given-names: "Vincent"
    orcid: "https://orcid.org/0000-0002-4655-3773"
  - family-names: "Greene"
    given-names: "Casey"
    orcid: "https://orcid.org/0000-0001-8713-9213"
cff-version: 1.2.0

GitHub Events

Total
  • Issue comment event: 1
  • Push event: 12
  • Pull request event: 3
  • Fork event: 1
Last Year
  • Issue comment event: 1
  • Push event: 12
  • Pull request event: 3
  • Fork event: 1

Committers

Last synced: over 1 year ago

All Time
  • Total Commits: 83
  • Total Committers: 5
  • Avg Commits per committer: 16.6
  • Development Distribution Score (DDS): 0.205
Past Year
  • Commits: 83
  • Committers: 5
  • Avg Commits per committer: 16.6
  • Development Distribution Score (DDS): 0.205
Top Committers
Name Email Commits
Jun Jiang s****g@g****m 66
smujiang s****g 12
raymond301 r****1@g****m 2
dependabot[bot] d****] 2
github-pages[bot] g****] 1

Issues and Pull Requests

Last synced: 4 months ago

All Time
  • Total issues: 0
  • Total pull requests: 9
  • Average time to close issues: N/A
  • Average time to close pull requests: 15 days
  • Total issue authors: 0
  • Total pull request authors: 5
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 4
  • Bot issues: 0
  • Bot pull requests: 5
Past Year
  • Issues: 0
  • Pull requests: 2
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 1
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • github-actions[bot] (7)
  • raymond301 (2)
  • bnovotny (2)
  • Elaheh-colab (1)
  • dependabot[bot] (1)
Top Labels
Issue Labels
Pull Request Labels
dependencies (1)

Dependencies

.github/workflows/build-preview.yaml actions
  • actions/checkout v3 composite
  • actions/configure-pages v2 composite
  • crazy-max/ghaction-dump-context v1 composite
  • rossjrw/pr-preview-action v1 composite
  • ruby/setup-ruby v1 composite
.github/workflows/build-site.yaml actions
  • JamesIves/github-pages-deploy-action v4 composite
  • actions/checkout v3 composite
  • actions/configure-pages v2 composite
  • crazy-max/ghaction-dump-context v1 composite
  • ruby/setup-ruby v1 composite
.github/workflows/first-time-setup.yaml actions
  • actions/checkout v3 composite
  • actions/github-script v6 composite
  • crazy-max/ghaction-dump-context v1 composite
  • peterjgrainger/action-create-branch v2.4.0 composite
  • stefanzweifel/git-auto-commit-action v4 composite
.github/workflows/on-pages.yaml actions
.github/workflows/on-pull-request.yml actions
.github/workflows/on-push.yml actions
.github/workflows/on-schedule.yaml actions
.github/workflows/update-citations.yaml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • crazy-max/ghaction-dump-context v1 composite
  • peter-evans/create-pull-request v4 composite
  • stefanzweifel/git-auto-commit-action v4 composite
  • tj-actions/verify-changed-files v13 composite
.github/workflows/update-url.yaml actions
  • actions/checkout v3 composite
  • actions/configure-pages v2 composite
  • actions/github-script v6 composite
  • crazy-max/ghaction-dump-context v1 composite
  • stefanzweifel/git-auto-commit-action v4 composite
  • tj-actions/verify-changed-files v13 composite
.docker/Dockerfile docker
  • ruby 3.1.2 build
_cite/requirements.txt pypi
  • PyYAML ==6.0
  • diskcache ==5.4.0
  • google-search-results ==2.4.1
  • manubot ==0.6.0
  • python-dotenv ==0.21.0
  • rich ==12.6.0
Gemfile rubygems
  • jekyll-feed >= 0 development
  • jekyll-last-modified-at >= 0 development
  • jekyll-redirect-from >= 0 development
  • jekyll-sitemap >= 0 development
  • jekyll-spaceship >= 0 development
  • jekyll ~> 4.3
  • webrick ~> 1.7