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Recent Releases of cosmicqc

cosmicqc - v0.1.5

Changes

  • Bump the python-packages group across 1 directory with 10 updates (@dependabot[bot] via #222)
  • Bump tornado from 6.4.2 to 6.5.1 (@dependabot[bot] via #223)
  • Update tornado to address CVE-2025-47287 (@d33bs via #217)
  • Update pre-commit-lite conditions (@d33bs via #214)
  • Update GH Actions ubuntu version (@d33bs via #213)
  • Add contamination detector class (@jenna-tomkinson via #216)
  • Bump setuptools from 70.1.1 to 78.1.1 (@dependabot[bot] via #219)
  • Bump the python-packages group across 1 directory with 7 updates (@dependabot[bot] via #215)
  • Bump the python-packages group with 3 updates (@dependabot[bot] via #211)
  • Bump h11 from 0.14.0 to 0.16.0 (@dependabot[bot] via #209)
  • Bump poethepoet from 0.33.1 to 0.34.0 in the python-packages group (@dependabot[bot] via #208)
  • Bump ipywidgets from 8.1.5 to 8.1.6 in the python-packages group (@dependabot[bot] via #207)
  • Bump selenium from 4.30.0 to 4.31.0 in the python-packages group (@dependabot[bot] via #206)
  • Bump the python-packages group with 3 updates (@dependabot[bot] via #205)
  • Bump the python-packages group across 1 directory with 6 updates (@dependabot[bot] via #204)
  • Bump the python-packages group across 1 directory with 9 updates (@dependabot[bot] via #200)
  • Bump cytotable from 0.0.12 to 0.0.13 in the python-packages group (@dependabot[bot] via #197)
  • Require poetry-dynamic-versioning within pyproject.toml (@d33bs via #189)
  • Update dependabot to group Python updates together (@d33bs via #188)
  • Bump cytodataframe from 0.0.17 to 0.0.18 (@dependabot[bot] via #196)
  • Bump coverage from 7.6.10 to 7.6.12 (@dependabot[bot] via #195)
  • Bump pyarrow from 18.1.0 to 19.0.0 (@dependabot[bot] via #193)
  • Bump jupytext from 1.16.6 to 1.16.7 (@dependabot[bot] via #192)
  • Bump sqlalchemy from 2.0.37 to 2.0.38 (@dependabot[bot] via #191)
  • Bump myst-nb from 1.1.2 to 1.2.0 (@dependabot[bot] via #190)
  • Bump cytodataframe from 0.0.16 to 0.0.17 (@dependabot[bot] via #186)
  • Bump jupyterlab from 4.3.4 to 4.3.5 (@dependabot[bot] via #185)
  • Bump datashader from 0.16.3 to 0.17.0 (@dependabot[bot] via #184)
  • Bump s3fs from 2024.12.0 to 2025.2.0 (@dependabot[bot] via #183)
  • Bump black from 24.10.0 to 25.1.0 (@dependabot[bot] via #182)
  • Add software DOI to repository (@d33bs via #181)
  • Bump macos gh actions runner version (@d33bs via #180)

- Python
Published by github-actions[bot] about 1 year ago

cosmicqc - v0.1.4

Changes

- Python
Published by github-actions[bot] over 1 year ago

cosmicqc - v0.1.3

Changes

  • Remove unused report template (@d33bs via #168)
  • Fix CytoDataFrame custom attributes in label_outliers (@d33bs via #166)
  • Bump coverage from 7.6.9 to 7.6.10 (@dependabot via #164)
  • Bump poethepoet from 0.31.1 to 0.32.0 (@dependabot via #163)
  • Bump jinja2 from 3.1.4 to 3.1.5 (@dependabot via #162)
  • Bump s3fs from 2024.10.0 to 2024.12.0 (@dependabot via #161)
  • Bump pyarrow from 16.1.0 to 18.1.0 (@dependabot via #160)
  • Bump jupyterlab from 4.3.3 to 4.3.4 (@dependabot via #159)
  • Bump jupytext from 1.16.5 to 1.16.6 (@dependabot via #158)
  • Bump jupyterlab from 4.3.2 to 4.3.3 (@dependabot via #157)
  • Bump cytodataframe from 0.0.13 to 0.0.15 (@dependabot via #156)
  • Bump jupytext from 1.16.4 to 1.16.5 (@dependabot via #155)
  • Bump hvplot from 0.11.1 to 0.11.2 (@dependabot via #154)

- Python
Published by github-actions[bot] over 1 year ago

cosmicqc - v0.1.2

Changes

  • Remove cytodataframe.show_report references (@d33bs via #153)
  • Enhance find_outliers and identify_outliers performance by avoiding duplication and filtering columns (@d33bs via #140)
  • Bump poethepoet from 0.30.0 to 0.31.1 (@dependabot via #151)
  • Bump coverage from 7.6.8 to 7.6.9 (@dependabot via #150)
  • Bump jupyterlab from 4.3.1 to 4.3.2 (@dependabot via #149)
  • Add pre-commit CI lite for automated fixes (@d33bs via #132)
  • Bump coverage from 7.6.4 to 7.6.8 (@dependabot via #147)
  • Bump pytest from 8.3.3 to 8.3.4 (@dependabot via #148)
  • Bump selenium from 4.26.1 to 4.27.1 (@dependabot via #145)
  • Bump sqlalchemy from 1.4.54 to 2.0.36 (@dependabot via #144)
  • Bump aiohttp from 3.10.5 to 3.10.11 (@dependabot via #143)
  • Bump cryptography from 43.0.0 to 43.0.1 (@dependabot via #142)
  • Bump tornado from 6.4.1 to 6.4.2 (@dependabot via #141)
  • Bump umap-learn from 0.5.6 to 0.5.7 (@dependabot via #135)
  • Bump cytotable from 0.0.10 to 0.0.12 (@dependabot via #136)
  • Bump jupyterlab from 4.2.5 to 4.3.1 (@dependabot via #137)
  • Bump dunamai from 1.22.0 to 1.23.0 (@dependabot via #138)
  • Bump sphinx-wagtail-theme from 6.3.0 to 6.4.0 (@dependabot via #139)
  • Documentation updates (CONTIBUTING.md link, redirector, and local build guidance) (@d33bs via #133)
  • Bump myst-nb from 1.1.1 to 1.1.2 (@dependabot via #131)
  • Bump pytest from 8.2.1 to 8.3.3 (@dependabot via #130)
  • Bump poethepoet from 0.27.0 to 0.30.0 (@dependabot via #129)
  • Bump coverage from 7.6.0 to 7.6.4 (@dependabot via #128)
  • Bump selenium from 4.25.0 to 4.26.1 (@dependabot via #127)

- Python
Published by github-actions[bot] over 1 year ago

cosmicqc - v0.1.1

Changes

  • Bump cytodataframe versions within lockfile (@d33bs via #126)

- Python
Published by github-actions[bot] over 1 year ago

cosmicqc - v0.1.0

Changes

  • Enable updated versions of CytoDataFrame to be used (@d33bs via #125)
  • Update ruff formatting to py310 (@d33bs via #123)
  • Add CytoDataFrame dependency; remove migrated code (@d33bs via #121)
  • Bump hvplot from 0.10.0 to 0.11.1 (@dependabot via #119)
  • Bump jupyterlab-code-formatter from 2.2.1 to 3.0.2 (@dependabot via #118)
  • Bump black from 24.4.2 to 24.10.0 (@dependabot via #117)
  • Bump plotly from 5.22.0 to 5.24.1 (@dependabot via #116)
  • Bump pyyaml from 6.0.1 to 6.0.2 (@dependabot via #115)
  • Bump html2image from 2.0.4.3 to 2.0.5 (@dependabot via #114)
  • Bump jupytext from 1.16.2 to 1.16.4 (@dependabot via #113)
  • Bump s3fs from 2024.9.0 to 2024.10.0 (@dependabot via #112)
  • Bump fire from 0.6.0 to 0.7.0 (@dependabot via #111)
  • Bump selenium from 4.24.0 to 4.25.0 (@dependabot via #110)
  • Enable Dependabot updates to Poetry lockfile (@d33bs via #109)
  • Add presentation section to docsite (@d33bs via #106)
  • Disable docs builds for dependabot (@d33bs via #105)
  • Turn off automatic notebook execution for docs builds (@d33bs via #103)
  • Format pyproject.toml file with pyproject-fmt using pre-commit (@d33bs via #102)
  • Bump actions/setup-python from 4 to 5 (@dependabot via #100)
  • Enable Dependabot updates for GitHub Actions (@d33bs via #99)
  • Add poster content for 2024 SBI2 conference (@d33bs via #67)

- Python
Published by github-actions[bot] over 1 year ago

cosmicqc - v0.0.11

Changes

  • Correct post build doctree removal path (@d33bs via #95)
  • Reduce UMAP rendered notebook size and avoid docsite .doctree files for publishing (@d33bs via #94)
  • Add example notebook with JUMP UMAP processing (@d33bs via #88)
  • Add nuclear speckles data with tests (@d33bs via #84)
  • Fix docs logo link and customize other links (@d33bs via #82)
  • Add find_outliers percentage of total (@d33bs via #81)
  • Bump jupyterlab from 4.2.3 to 4.2.5 (@dependabot via #80)
  • Remove python 3.8 from tests (@d33bs via #78)
  • Add docsite html for base path redirection (@d33bs via #74)
  • Add docsite (@d33bs via #73)
  • Add label and identify functions to init file (@jenna-tomkinson via #71)
  • Update pull request template (@d33bs via #68)

- Python
Published by github-actions[bot] over 1 year ago

cosmicqc - v0.0.10

Changes

  • Fix for nuclear speckle image display in CytoDataFrame (@d33bs via #64)

- Python
Published by github-actions[bot] almost 2 years ago

cosmicqc - v0.0.9

Changes

  • Add code coverage badge through coverage.py (@d33bs via #63)

- Python
Published by github-actions[bot] almost 2 years ago

cosmicqc - v0.0.8

Changes

  • Update README with logo and documentation (@jenna-tomkinson via #61)
  • Add CytoDataFrame segmentation mask outline capabilities for image display in notebooks (@d33bs via #59)
  • Create image masks for NF1 test data (@d33bs via #56)
  • Logo (@vincerubinetti via #53)
  • Remove unnecessary data (@d33bs via #52)
  • Bump certifi from 2024.6.2 to 2024.7.4 (@dependabot via #51)

- Python
Published by github-actions[bot] almost 2 years ago

cosmicqc - v0.0.7

Changes

  • Update SCDataFrame name to CytoDataFrame (@d33bs via #50)
  • Enable cropped image-based output for .tiff files with SCDataFrame (@d33bs via #44)
  • Add report generation capabilities (@d33bs via #39)
  • Add CLI for coSMicQC (@d33bs via #34)

- Python
Published by github-actions[bot] almost 2 years ago

cosmicqc - v0.0.6

Changes

  • Add SCDataFrame class to enable file-based or DataFrame-based data handling (input and output) (@d33bs via #32)

- Python
Published by github-actions[bot] almost 2 years ago

cosmicqc - v0.0.5

Changes

  • Add poetry-dynamic-versioning for PyPI builds (@d33bs via #29)

- Python
Published by github-actions[bot] almost 2 years ago

cosmicqc - v0.0.4

Changes

  • Fix for environment setup with PyPI package build action (@d33bs via #26)

- Python
Published by github-actions[bot] almost 2 years ago

cosmicqc - v0.0.3

Changes

  • Add automated release and publish capabilities (@d33bs via #25)
  • Add Python 3.8 compatibility (@d33bs via #20)
  • Add labeled outlier dataframe output capability (@d33bs via #16)
  • Add YAML-based threshold input options for find_outliers (@d33bs via #13)
  • Update name to coSMicQC (@d33bs via #12)
  • Add versioning capabilities (@d33bs via #8)
  • Add initial code, a test, and community health files (@d33bs via #3)

- Python
Published by github-actions[bot] almost 2 years ago