dorado

dorado: A Python package for simulating passive particle transport in shallow-water flows - Published in JOSS (2020)

https://github.com/passah2o/dorado

Science Score: 95.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
    Found 2 DOI reference(s) in README and JOSS metadata
  • Academic publication links
    Links to: joss.theoj.org
  • Committers with academic emails
    5 of 6 committers (83.3%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
    Published in Journal of Open Source Software

Keywords

hydrodynamic-modeling lagrangian numerical-modeling numerical-modelling particle particle-routing particle-tracing particle-tracking particle-transport particles passive-tracers random-walk rivers simulator tracer

Scientific Fields

Mathematics Computer Science - 32% confidence
Last synced: 6 months ago · JSON representation

Repository

For shallow-water Lagrangian particle routing.

Basic Info
Statistics
  • Stars: 59
  • Watchers: 2
  • Forks: 11
  • Open Issues: 6
  • Releases: 18
Topics
hydrodynamic-modeling lagrangian numerical-modeling numerical-modelling particle particle-routing particle-tracing particle-tracking particle-transport particles passive-tracers random-walk rivers simulator tracer
Created over 5 years ago · Last pushed 6 months ago
Metadata Files
Readme License

README.md

dorado - Lagrangian particle routing

build codecov PyPI - Python Version PyPI version status

dorado is a Python package for simulating passive Lagrangian particle transport over flow-fields from any 2D shallow-water hydrodynamic model using a weighted random walk methodology.

For user guides and detailed examples, refer to the documentation.

Example Uses:

Particles on an Unsteady ANUGA Flow Field of the Wax Lake Delta

Particles on a DeltaRCM Simulated Delta

Installation:

dorado supports Python 3.11+. For the full distribution including examples, clone this repository using git clone and run python setup.py install from the cloned directory. To test this "full" installation, you must first install pytest via pip install pytest. Then from the cloned directory the command pytest can be run to ensure that your installed distribution passes all of the unit tests.

For a lightweight distribution including just the core functionality, use pip to install via PyPI:

pip install pydorado

Installation using conda via conda-forge is also supported:

conda install -c conda-forge pydorado

For additional installation options and instructions, refer to the documentation.

Contributing

We welcome contributions to the dorado project. Please open an issue or a pull request if there is functionality you would like to see or propose. Refer to our contributing guide for more information.

Citing

If you use this package and wish to cite it, please use the Journal of Open Source Software article.

Funding Acknowledgments

This work was supported in part by NSF EAR-1719670, the NSF GRFP under grant DGE-1610403 and the NASA Earth Venture Suborbital (EVS) award 17-EVS3-17_1-0009 in support of the DELTA-X project.

Owner

  • Name: PassaH2O Group
  • Login: passaH2O
  • Kind: organization

JOSS Publication

dorado: A Python package for simulating passive particle transport in shallow-water flows
Published
October 25, 2020
Volume 5, Issue 54, Page 2585
Authors
Jayaram Hariharan ORCID
Department of Civil, Architectural and Environmental Engineering, The University of Texas at Austin
Kyle Wright ORCID
Department of Civil, Architectural and Environmental Engineering, The University of Texas at Austin
Paola Passalacqua ORCID
Department of Civil, Architectural and Environmental Engineering, The University of Texas at Austin
Editor
Katy Barnhart ORCID
Tags
Lagrangian transport random walk hydrodynamics

GitHub Events

Total
  • Create event: 10
  • Release event: 6
  • Issues event: 8
  • Watch event: 5
  • Delete event: 3
  • Issue comment event: 11
  • Push event: 17
  • Pull request review event: 6
  • Pull request review comment event: 15
  • Pull request event: 12
  • Fork event: 1
Last Year
  • Create event: 10
  • Release event: 6
  • Issues event: 8
  • Watch event: 5
  • Delete event: 3
  • Issue comment event: 11
  • Push event: 17
  • Pull request review event: 6
  • Pull request review comment event: 15
  • Pull request event: 12
  • Fork event: 1

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 319
  • Total Committers: 6
  • Avg Commits per committer: 53.167
  • Development Distribution Score (DDS): 0.295
Past Year
  • Commits: 10
  • Committers: 3
  • Avg Commits per committer: 3.333
  • Development Distribution Score (DDS): 0.2
Top Committers
Name Email Commits
JayH j****n@u****u 225
wrightky k****t@u****u 50
Wright k****5@a****u 39
Katherine Barnhart k****t@u****v 3
Paola Passalacqua p****a@a****u 1
Caitlin (Katie) Turner 7****r 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 21
  • Total pull requests: 42
  • Average time to close issues: 3 months
  • Average time to close pull requests: about 1 month
  • Total issue authors: 5
  • Total pull request authors: 4
  • Average comments per issue: 1.0
  • Average comments per pull request: 1.88
  • Merged pull requests: 39
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 5
  • Pull requests: 12
  • Average time to close issues: 19 days
  • Average time to close pull requests: 5 days
  • Issue authors: 2
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 2.5
  • Merged pull requests: 10
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • elbeejay (13)
  • kbarnhart (3)
  • gassmoeller (2)
  • caitlinturner (2)
  • wrightky (1)
Pull Request Authors
  • elbeejay (30)
  • wrightky (7)
  • caitlinturner (4)
  • kbarnhart (1)
Top Labels
Issue Labels
enhancement (2) good first issue (2) documentation (2) bug (1)
Pull Request Labels

Packages

  • Total packages: 3
  • Total downloads:
    • pypi 196 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 1
    (may contain duplicates)
  • Total versions: 51
  • Total maintainers: 2
proxy.golang.org: github.com/passaH2O/dorado
  • Versions: 17
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 6 months ago
proxy.golang.org: github.com/passah2o/dorado
  • Versions: 17
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.4%
Average: 5.6%
Dependent repos count: 5.8%
Last synced: 6 months ago
pypi.org: pydorado

dorado - Lagrangian particle routing routine via weighted random walks

  • Homepage: https://github.com/passaH2O/dorado
  • Documentation: https://pydorado.readthedocs.io/
  • License: MIT License Copyright (c) 2020 Passalacqua Group Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
  • Latest release: 2.6.0
    published 6 months ago
  • Versions: 17
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 196 Last month
Rankings
Dependent packages count: 7.3%
Stargazers count: 9.8%
Forks count: 12.6%
Average: 15.1%
Dependent repos count: 22.1%
Downloads: 23.9%
Maintainers (2)
Last synced: 6 months ago

Dependencies

requirements.txt pypi
  • future *
  • matplotlib *
  • numpy *
  • scipy *
  • tqdm *
.github/workflows/build.yml actions
  • JamesIves/github-pages-deploy-action 3.7.1 composite
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • codecov/codecov-action v1 composite
.github/workflows/deploy.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite
  • elbeejay/conda-publish-action v1.5 composite
pyproject.toml pypi