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r-taxonomycleanr

R package for cleaning taxonomic data.

https://github.com/ediorg/taxonomycleanr

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (11.1%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

R package for cleaning taxonomic data.

Basic Info
Statistics
  • Stars: 12
  • Watchers: 8
  • Forks: 4
  • Open Issues: 14
  • Releases: 0
Created over 8 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog Contributing License Code of conduct Authors Codemeta

README.md

Travis-CI Build Status codecov.io

taxonomyCleanr

The taxonomyCleanr is a user friendly workflow and collection of functions to help you: 1. Identify and correct misspelled taxa 2. Resolve taxa to an authority (e.g. Integrated Taxonomic Information System (ITIS)) 3. Get hierarchical rank values 4. Get common names 5. Render taxonomic information in the Ecological Metadata Language (EML).

The taxonomyCleanr is based on the taxize R package developed by Chamberlain et al. (2016).

Install

```

Install from GitHub

remotes::install_github("EDIorg/taxonomyCleanr") ```

Usage

Check out example use cases in the taxonomyCleanr website articles

Roadmap

Coming soon!

Contributing

We welcome contributions of all forms including bug reports, requests for development, and new functionality. Please reference our code conduct and contributing guidelines for submitting pull requests.

Testing

Unit tests are found under /tests and follow the testthat methodology.

Versioning

Versioning for the taxonomyCleanr follows semantic versioning.

Authors

See the list of contributors to this project.

Owner

  • Name: Environmental Data Initiative
  • Login: EDIorg
  • Kind: organization
  • Email: info@edirepository.org

Accelerating the archive and reuse of environmental data

CodeMeta (codemeta.json) 

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GitHub Events

Total
  • Issues event: 5
  • Delete event: 4
  • Issue comment event: 14
  • Push event: 12
  • Pull request event: 8
  • Fork event: 1
  • Create event: 4
Last Year
  • Issues event: 5
  • Delete event: 4
  • Issue comment event: 14
  • Push event: 12
  • Pull request event: 8
  • Fork event: 1
  • Create event: 4

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 43
  • Total pull requests: 12
  • Average time to close issues: 3 months
  • Average time to close pull requests: 9 days
  • Total issue authors: 8
  • Total pull request authors: 4
  • Average comments per issue: 1.33
  • Average comments per pull request: 0.33
  • Merged pull requests: 11
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 3
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 1 minute
  • Issue authors: 2
  • Pull request authors: 1
  • Average comments per issue: 5.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 3
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • clnsmth (19)
  • ctc3d (13)
  • srearl (6)
  • kzollove (2)
  • atn38 (1)
  • RobLBaker (1)
  • cmbappleby (1)
  • Rekyt (1)
Pull Request Authors
  • clnsmth (8)
  • srearl (2)
  • atn38 (1)
  • cob-staines (1)
  • pendragon1998 (1)
Top Labels
Issue Labels
enhancement (16) bug (6)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads: unknown
  • Total dependent packages: 1
  • Total dependent repositories: 0
  • Total versions: 1
conda-forge.org: r-taxonomycleanr
  • Versions: 1
  • Dependent Packages: 1
  • Dependent Repositories: 0
Rankings
Dependent packages count: 28.8%
Average: 31.4%
Dependent repos count: 34.0%
Last synced: 10 months ago

Dependencies

DESCRIPTION cran
  • EML >= 2.0.3 imports
  • covr * imports
  • data.table >= 1.12.2 imports
  • httr >= 1.4.1 imports
  • ritis >= 1.0.0 imports
  • stringr >= 1.2.0 imports
  • taxize >= 0.9.99 imports
  • worrms >= 0.4.2 imports
  • knitr * suggests
  • rmarkdown * suggests
  • testthat * suggests
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.4.1 composite
  • actions/checkout v3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite