Bioassays
Bioassays: a new package in R for analyzing cellular assays - Published in JOSS (2020)
Science Score: 93.0%
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○CITATION.cff file
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✓.zenodo.json file
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Found 1 DOI reference(s) in JOSS metadata -
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✓JOSS paper metadata
Published in Journal of Open Source Software
Scientific Fields
Repository
Basic Info
- Host: GitHub
- Owner: anwarbio
- License: gpl-3.0
- Language: R
- Default Branch: master
- Size: 1010 KB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 2
- Open Issues: 0
- Releases: 2
Metadata Files
README.md
Bioassays
'Bioassays' is an R package, designed to provide a wide range of functions relevant to multi-well plate assays. It can handle data from any of the standard multi-well plate format: 6, 12, 24, 96 or 384 well plates. ‘Bioassays’ can help in formatting, visualizing and analyzing multi-well plate data. It has functions for handling outliers, for handling multiple data sets with separate blanks, for estimating values from standard curves, for summarizing data and for doing statistical analysis. Moreover, it is strongly documented in a manner designed to be easy for even beginners to grasp.
Installation
You can install the released version of bioassays from CRAN with:
r
install.packages("bioassays")
The latest development version can be installed from github with the remotes package
r
library(remotes)
install_github("anwarbio/bioassays")
Example
Detail’s of various funtions in this package is provided in ‘bioassays-vignette’. Examples on how to use this package is provided in ‘bioassays-example’ in Vignette.
License: GPL-3.0
https://github.com/anwarbio/bioassays/blob/master/LICENSE
Contribute
We love your input! Users may request new features by opening a GitHub Issue, or may contribute their own additions and improvements via a pull request. Similarly, if you run into problems while using this package, or require technical support, do not hesitate to request support through a GitHub Issue. If you use ‘Bioassays’ in your work and would like to further collaborate, I would be more than willing to discuss it over email or GitHub Issue. When you submit code changes, your submissions are understood to be under the same GPL-3.0 that covers this project.
An incomplete list of possible improvements: * Include support for qPCR data analysis * Include provisions for user template * Include capability for plotting data
Owner
- Login: anwarbio
- Kind: user
- Repositories: 1
- Profile: https://github.com/anwarbio
JOSS Publication
Bioassays: a new package in R for analyzing cellular assays
Authors
Deanery of Biomedical Sciences, University of Edinburgh, UK
Editor
Frederick Boehm
Tags
Multi-well plate bioassaysGitHub Events
Total
Last Year
Committers
Last synced: 7 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| anwarbio | b****r@g****m | 75 |
| Thomas Sandmann | s****n@d****m | 4 |
| Frederick Boehm | f****m@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 4
- Total pull requests: 3
- Average time to close issues: 2 months
- Average time to close pull requests: 3 months
- Total issue authors: 2
- Total pull request authors: 3
- Average comments per issue: 1.0
- Average comments per pull request: 0.33
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- tomsing1 (3)
- ghost (1)
Pull Request Authors
- olivroy (2)
- fboehm (1)
- tomsing1 (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- R >= 4.00 depends
- dplyr * imports
- ggplot2 * imports
- magrittr * imports
- nplr * imports
- reshape2 * imports
- rlang * imports
- stats * imports
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests