polarityjam - v0.3.0

What's Changed

• fix import error, fix microsam plotting problem by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/157
• additional cellpose parameter: iteration by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/158
• Rename major to minor ratio by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/159
• symmetry by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/162
• Fix test output by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/163
• fixtestoutput by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/164
• fixed issue in plotter for the case the img_seg has only one channel … by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/165

Full Changelog: https://github.com/polarityjam/polarityjam/compare/v0.2.2...v0.3.0

- Python
Published by jpalbrecht over 1 year ago

polarityjam - polarityjam version 0.1.6

In this release, the SAM segmentation has been integrated. New features circularity and shape index have been added as descriptors of cell and nucleus shape. The run-key option has been generalised to allow an arbitrary number of conditions and column names.

What's Changed

• Version 0.1.5 by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/87
• fix test import structure by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/88
• fix import structure by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/89
• Fix sam segment by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/90
• fix SAM segmentation plugin by @jpalbrecht in https://github.com/polarityjam/polarityjam/pull/91
• 93 specify columns for key file conditions in parameter file by @wgiese in https://github.com/polarityjam/polarityjam/pull/97
• 94 implement circularity and shape index by @wgiese in https://github.com/polarityjam/polarityjam/pull/98
• 103 rename estimated cell diameter nucleus to estimated nucleus diameter by @wgiese in https://github.com/polarityjam/polarityjam/pull/104
• changes from issue 103 by @wgiese in https://github.com/polarityjam/polarityjam/pull/105

Full Changelog: https://github.com/polarityjam/polarityjam/compare/v0.1.5...v0.1.6

- Python
Published by wgiese over 2 years ago