Science Score: 67.0%
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○Scientific vocabulary similarity
Low similarity (8.6%) to scientific vocabulary
Repository
SpinEx ML part @mgh
Basic Info
- Host: GitHub
- Owner: kylie0914
- Language: Python
- Default Branch: main
- Size: 1.38 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
SpinEx-Machine-Learning (SpinEx-ML)
SpinEx
This is the github repo for the paper "Integrated disc-fluidics enables high-throughput sample processing for the analysis of extracellular vesicles". SpinEx-ML is a practical utility to evaluate SpinEx. We used the obtained data using SpinEx for cancer diagnostics and classification. We focused on five prevalent tumor types, breast, lung, liver, pancreas, and colon, as potential detection targets. In addition, non-cancer control samples were obtained from non-cancer donors.
The overall workflow of SpinEx-ML is shown in below
Simple Description
1. Cancer diagnostic model
Dx fold in SpinExML contains whole part of ancer diagnostic model. Three .py files in that folder: Utils.py, CrossValidationLassoDx.py, repeatedholdoutLassoDx.py. We recommend to use CrossValidationLasso_Dx.py for stratified K-fold evaluation.
2. Cancer classification model
Multi folder in SpinExML contains whole part of cancer classification model. Three .py files in that folder: Utils.py, CancerTypeclassification.py, Visualization.py. Here, you can obtain the result of the CancerType_classification.py file and then visualize it as the result of applying t-sne/Umap to the Visualization.py file.
Owner
- Name: kylie0914
- Login: kylie0914
- Kind: user
- Company: GIST
- Repositories: 1
- Profile: https://github.com/kylie0914
Citation (CITATION.cff)
cff-version: 1.1.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Choi
given-names: Yoonjeong
orcid: https://orcid.org/0000-0000-0000-0000
title:kylie0914/SpinEx: SpinEx
version: v1.0.1
date-released: 2024-07-08
GitHub Events
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Last Year
- Push event: 8