Releases | Open Source Science

Updated label for reads (assembly reads not raw reads)
Expanded text in workflow annotation
Added workflow report text into the workflow annotation, as it sometimes disappears
Uploaded new workflow and diagram
Updated changelog and citation.cff files

Published by AnnaSyme about 1 year ago

No change to content.

Making a new release to unfreeze content in WorkflowHub, to troubleshoot the missing diagram on the overview page.

Published by AnnaSyme over 1 year ago

Update to sync with RO crate file. No changes to workflow.

Published by AnnaSyme almost 2 years ago

Update to remove workflow version from workflow name. No changes to workflow.

Published by AnnaSyme almost 2 years ago

Update to trigger LifeMonitor No changes to workflow.

Published by supernord almost 2 years ago

Update to trigger LifeMonitor No changes to workflow.

Published by AnnaSyme almost 2 years ago

Created new steps to calculate genome coverage
Workflow now additionally requires raw sequencing reads as input
Created a new table for assembly statistics, called metrics.tsv, which includes genome coverage and selected lines from Fasta Statistics
Updated BUSCO version to Galaxy Version 5.4.6+galaxy0
New default settings for BUSCO: lineage = eukaryota; for Quast: lineage = eukaryotes, genome = large
Created a new table to report BUSCO versions and dependencies
Edited workflow report to display these two new tables - assembly metrics and BUSCO versions

Published by AnnaSyme about 2 years ago

Updated meryl to the latest version in the workflow: Galaxy Version 1.3+galaxy6
Fixed input data issue: added raw reads as input to meryl
Thanks to:
- Katherine Farquharson & Lauren Alexander (University of Sydney) for reporting the workflow issue and testing workflow version 1.1.0.
- Galaxy Australia team for troubleshooting the workflow

Published by supernord almost 3 years ago

Published by supernord over 3 years ago

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