Flint
Flint: a simulator for biological and physiological models in ordinary and stochastic differential equations - Published in JOSS (2020)
Science Score: 95.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 4 DOI reference(s) in README and JOSS metadata -
✓Academic publication links
Links to: joss.theoj.org -
✓Committers with academic emails
1 of 3 committers (33.3%) from academic institutions -
○Institutional organization owner
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✓JOSS paper metadata
Published in Journal of Open Source Software
Keywords
Repository
A simulator for biological and physiological models
Basic Info
- Host: GitHub
- Owner: flintproject
- License: mit
- Language: C++
- Default Branch: master
- Homepage: https://flintproject.github.io/
- Size: 116 MB
Statistics
- Stars: 6
- Watchers: 4
- Forks: 3
- Open Issues: 8
- Releases: 2
Topics
Metadata Files
README.md
Flint
Flint is a simulator for biological and physiological models written in CellML, PHML, and/or SBML. Originally developed as part of an in silico platform of Physiome, now it aims to provide an open, language-agnostic resource for reproducible simulation studies. While existing simulation tools, e.g. COPASI and OpenCOR, are great for simulation for models in a specific language, you may find Flint useful if searching a unified solution.
Flint has the following features:
- It can numerically solve ordinary or stochastic differential equations derived from models.
- It runs on Windows, macOS, Linux, etc.
- It provides fully-featured graphical user interface with simplified command-line interface.
- It is open source under the MIT license.
Download
Binary installers of Flint's official releases for Windows, macOS, CentOS/RHEL 7 and CentOS/RHEL 8 are freely available at
https://flintproject.github.io/
as well as documentation including its user manual and tutorials.
Support
Please feel free to submit an issue on Flint's GitHub Issues for bugs or feature requests that you come up with when using Flint. For any question or suggestion about Flint, send an email to the author or to the official mailing list if you prefer open, transparent communication.
Hacking
Please see INSTALL.org to build and install Flint from source. Pull requests are always welcome. Reading CONTRIBUTING.md helps if you are interested in contributing to Flint.
Owner
- Name: Flint project
- Login: flintproject
- Kind: organization
- Email: flint-discuss@googlegroups.com
- Website: https://flintsimulator.org/
- Repositories: 1
- Profile: https://github.com/flintproject
Flint project is the home of Flint, a simulator for biological and physiological models.
JOSS Publication
Flint: a simulator for biological and physiological models in ordinary and stochastic differential equations
Authors
Graduate School of Medicine, Yamaguchi University
Graduate School of Medicine, Yamaguchi University
Editor
Mark A. Jensen
Tags
biology physiology numerical analysis simulation ODE SDEGitHub Events
Total
- Issues event: 1
- Watch event: 1
- Issue comment event: 1
- Push event: 12
Last Year
- Issues event: 1
- Watch event: 1
- Issue comment event: 1
- Push event: 12
Committers
Last synced: 7 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Takeshi Abe | t****e@o****p | 1,800 |
| Mark A. Jensen | m****t@f****s | 5 |
| Daniel S. Katz | d****z@i****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 28
- Total pull requests: 3
- Average time to close issues: 4 months
- Average time to close pull requests: about 14 hours
- Total issue authors: 2
- Total pull request authors: 2
- Average comments per issue: 0.96
- Average comments per pull request: 1.0
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- tabe (26)
- mstimberg (2)
Pull Request Authors
- majensen (2)
- danielskatz (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- actions/checkout v2 composite
- actions/upload-artifact v2 composite