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Recent Releases of qMRLab

qMRLab - Release v2.4.1 Zenodo Archive

This release has been made to create a Zenodo archive for the first time. The repository content of this release is identical with that of Release v2.4.1.

Scientific Software - Peer-reviewed - MATLAB
Published by agahkarakuzu over 5 years ago

qMRLab - Release v2.4.1

Release [2.4.1] - 2020-09-02

New ✨

  • 🆕 model: inversion_recovery
    • Add general equation fitting in addition to Barral's model.

Improvements 🚀

  • GUI (JOSS review by @mfroeling)
    • Please see changes here.
  • Documentation (JOSS review by @grlee77)
    • Please see changes here

Bug Fixes🐛

  • FilterClas bug fix.

Other

  • Change citation reference to JOSS paper
    • Karakuzu A., Boudreau M., Duval T.,Boshkovski T., Leppert I.R., Cabana J.F., Gagnon I., Beliveau P., Pike G.B., Cohen-Adad J., Stikov N. (2020), qMRLab: Quantitative MRI analysis, under one umbrella doi: 10.21105/joss.02343

Scientific Software - Peer-reviewed - MATLAB
Published by agahkarakuzu over 5 years ago

qMRLab - Release v2.4.0

[2.4.0] - 2020-02-26

New ✨

  • 🆕 model: mp2rage
  • 🆕 model: mono_t2
    • Fit MESE data to create a T2map.
  • 🆕 simulator: Monte-Carlo Diffusion
    • Monte Carlo simulator for 2D diffusion is able to generate synthetic diffusion signal from any 2D axon packing.
    • An MRathon project by @Yasuhik, @TomMingasson and @tanguyduval.
  • 🆕 Changelog ❤️

Improvements 🚀

  • Model: qsm_sb
    • With the new echo combination implementation, qsm_sb can now take multi-echo GRE data.
    • An MRathon project by @jeremie-fouquet.
  • Get rid of redundant buttons in GUI Protocol panel.

Bug Fixes🐛

  • qMRgenBatch account for models w/o fixed required inputs (e.g. mp2rage).
  • Remove old built packages from qmrlab/mcrgui.
  • Fix qmrlab/octjn dependencies.

Scientific Software - Peer-reviewed - MATLAB
Published by agahkarakuzu almost 6 years ago

qMRLab - v2.3.0

What is new?

  • Filtering module (/processing) for B1 mapping: filtermap
  • Quantitative susceptibility mapping: qsm_sb
  • Magnetization transfer ratio: mt_ratio
  • An intuitive ROI toolbox replaces the old display panel, providing an array of tools for the quick inspection of the fitted data and improved visualization.
  • Automatic Jupyter Notebook generation (qMRgenJNB).
  • A Binder badge appears for every model on the documentation, allowing users to execute the documentation with zero installation.
  • Azure DevOps for building standalone qMRLab applications and creating version tagged Docker images.
  • Docker image qmrlab/mcrgui to use qMRLab's GUI via Docker
  • Docker image qmrlab/octjn to use qMRLab in a Jupyter Notebook (Octave)
  • Bloch simulations are added for vfa_t1
  • Community profile checklist has been completed

Improvements

  • vfa_t1 performance improvement
  • ir_t1 parameter descriptions are improved
  • b1_dam protocol descriptions have been updated
  • FitTempResults is now saved every five minutes instead of every 20 voxels
  • GUI bug fixes

Scientific Software - Peer-reviewed - MATLAB
Published by agahkarakuzu almost 7 years ago

qMRLab - v2.2.0

Release version 2.2.0

  • Bug fixes
  • General GUI improvements
  • Documentation improvements
  • Folder cleanup and improved project directory structure
  • Data import (GUI) exception handling & warnings
  • Improved colorbar location & format
  • Added Coveralls.io test coverage
  • Updated Travis test configurations
  • [b0_dem] Save unwrapped phase as a fitting output.
  • Add ISO 8601-style date/time in FitResults output directory name.
  • ROI Toolbox

Scientific Software - Peer-reviewed - MATLAB
Published by mathieuboudreau over 7 years ago

qMRLab - v2.1.0

Major changes

  • Improved automated documentation
  • Automated batch examples generation
  • Patching functionality retroactive compatibility
  • New histogram GUI controls
  • Renamed models

Minor changes

  • Update NODDI toolbox 0.9 -> 1.0
  • Remote data now hosted on OSF (accessible through downloadData.m)
  • New Save/Load models functionality
  • Histogram masking bug fix
  • VFA voxel-wise functionality #105

Scientific Software - Peer-reviewed - MATLAB
Published by mathieuboudreau about 8 years ago

qMRLab - v2.0.5

Fix SPGR

Report bugs: https://github.com/neuropoly/qMRLab/issues Documentation: http://qmrlab.readthedocs.io/en/master/documentation.html

Scientific Software - Peer-reviewed - MATLAB
Published by tanguyduval over 8 years ago

qMRLab - v2.0.3

Fix Yarmikh + Ramani + bSSFP "block equation" simulations

Report bugs: https://github.com/neuropoly/qMRLab/issues Documentation: http://qmrlab.readthedocs.io/en/master/documentation.html

Scientific Software - Peer-reviewed - MATLAB
Published by tanguyduval over 8 years ago

qMRLab - v2.0.2

New data demo Report bugs: https://github.com/neuropoly/qMRLab/issues Documentation: http://qmrlab.readthedocs.io/en/master/documentation.html

Scientific Software - Peer-reviewed - MATLAB
Published by tanguyduval over 8 years ago

qMRLab - v2.0.1

Report bugs: https://github.com/neuropoly/qMRLab/issues Documentation: http://qmrlab.readthedocs.io/en/master/documentation.html

Scientific Software - Peer-reviewed - MATLAB
Published by tanguyduval over 8 years ago

qMRLab - v2.0.0

New quantitative modalities: Diffusion, Myelin Water, Relaxometry, fields maps... The object-oriented framework makes it: * easy to batch: Model = SPGR; Results = Model.fit(data); * standardize qMR methods and their simulation * modulary with "Addons" .

Report bugs: https://github.com/neuropoly/qMRLab/issues Documentation: https://github.com/neuropoly/qMRLab/wiki

Scientific Software - Peer-reviewed - MATLAB
Published by tanguyduval over 8 years ago

qMRLab - qMTLab

Scientific Software - Peer-reviewed - MATLAB
Published by tanguyduval about 10 years ago