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oscillationmethods

Methodological considerations for analyzing and interpreting neural oscillations.

https://github.com/oscillationmethods/oscillationmethods

Science Score: 67.0%

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    Found 5 DOI reference(s) in README
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    Links to: wiley.com
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    Low similarity (8.5%) to scientific vocabulary

Keywords

cycle-by-cycle digital-signal-processing ecog eeg meg neural-oscillations neuroscience spectral-parameterization
Last synced: 6 months ago · JSON representation ·

Repository

Methodological considerations for analyzing and interpreting neural oscillations.

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  • Stars: 29
  • Watchers: 4
  • Forks: 10
  • Open Issues: 0
  • Releases: 0
Topics
cycle-by-cycle digital-signal-processing ecog eeg meg neural-oscillations neuroscience spectral-parameterization
Created almost 6 years ago · Last pushed over 2 years ago
Metadata Files
Readme License Citation

README.md

Oscillation Methods

Oscillation Methods project repository: methodological considerations for studying neural oscillations.

Paper Website

Overview

This project is a overview of methodological considerations for analyzing neural oscillations.

Using simulated data, we explore the relationship between data properties and common analysis approaches, highlighting potential issues, organized into a collection of 7 methodological considerations.

These methodological considerations are: - #1) verifying the presence of oscillations - #2) band definitions - #3) aperiodic activity - #4) temporal variability - #5) waveform shape - #6) overlapping rhythms / source separation - #7) power confounds / signal-to-noise ratio

Each topic is covered by a notebook in this repository.

Reference

This project is described in the following paper:

Donoghue T, Schaworonkow N, & Voytek B (2022). Methodological considerations for studying neural 
oscillations. European Journal of Neuroscience, 55(11-12), 3502-3527 DOI: 10.1111/ejn.15361

Direct Link: https://onlinelibrary.wiley.com/doi/10.1111/ejn.15361

Requirements

If you want to re-run this project, you can install the required dependencies and re-run the notebooks.

This repository requires Python (>=3.6), and standard scientific packages.

This project also requires the following additional packages:

The general set of requirements is listed in requirements.txt. Note that some notebooks have additional requirements, that are listed in the notebook.

Owner

  • Name: Oscillation Methods
  • Login: OscillationMethods
  • Kind: organization
  • Email: tdonoghue.research@gmail.com

Methodological considerations for neural oscillations.

Citation (CITATION.cff) 

cff-version: 1.2.0
message: >-
  If you use this software, please cite it using the metadata from this file.
type: software
title: 'OscillationMethods'
authors:
- given-names: 'Thomas'
  family-names: 'Donoghue'
  orcid: 'https://orcid.org/0000-0001-5911-0472'
- given-names: 'Natalie'
  family-names: 'Schaworonkow'
  orcid: 'https://orcid.org/0000-0002-2103-1178'
- given-names: 'Bradley'
  family-names: 'Voytek'
  orcid: 'https://orcid.org/0000-0003-1640-2525'
repository-code: 'https://github.com/OscillationMethods/OscillationMethods'
url: 'https://oscillationmethods.github.io/'
license: MIT
preferred-citation:
  type: article
  authors:
  - given-names: 'Thomas'
    family-names: 'Donoghue'
    orcid: 'https://orcid.org/0000-0001-5911-0472'
  - given-names: 'Natalie'
    family-names: 'Schaworonkow'
    orcid: 'https://orcid.org/0000-0002-2103-1178'
  - given-names: 'Bradley'
    family-names: 'Voytek'
    orcid: 'https://orcid.org/0000-0003-1640-2525'
  doi: '10.1111/ejn.15361'
  journal: 'European Journal of Neuroscience'
  title: 'Methodological considerations for studying neural oscillations'
  issue: 11-12
  year: 2022
  volume: 55
  start: 3502
  end: 3527

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Dependencies

requirements.txt pypi
  • bycycle ==0.1.3
  • fooof >=1.0.0
  • matplotlib *
  • neurodsp >=2.2.0
  • numpy *
  • scipy *
  • seaborn *