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Open Source Science

https://github.com/demichie/openpdac_wf61

https://github.com/demichie/openpdac_wf61

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
  • ✓
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    Found codemeta.json file
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    Found .zenodo.json file
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    Scientific vocabulary similarity
    Low similarity (3.4%) to scientific vocabulary
Last synced: 4 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: demichie
  • Language: AGS Script
  • Default Branch: main
  • Size: 12.5 MB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created 8 months ago · Last pushed 8 months ago
Metadata Files
Readme

README 

From the user home (/users/USERNAME):

mkdir OpenPDACconda
module load LUMI
module load lumi-container-wrapper
conda-containerize new --prefix OpenPDACconda environment.yml

To use the Anaconda environment:

export PATH="/users/USERNAME/OpenPDACconda/bin:$PATH"

This path has to be changed also in the files Allrun.pre-1 and Allrun.post-1 

Copy the .sif file in a folder and edit its path in Allrun.post-2

To execute a OpenPDAC simulation:

1) sbatch ncores-pre-1.sh to execute blockMesh and decomposePar (all serial)

2) sbatch ncores-pre-2.sh to execute topoSet topoGrid and atmospheric initialisation (all parallel)

3) sbatch ncores-run.sh to execute the run (parallel)

4) sbatch ncores-post-1.sh to execute plotBallistics.py (serial) and createMaps.py (parallel)

5) sbatch ncores-post-2.sh to execute plotIso.py (parallel)

Owner

  • Name: Mattia de' Michieli Vitturi
  • Login: demichie
  • Kind: user
  • Location: Pisa, Italy
  • Company: Istituto Nazionale di Geofisica e Vulcanologia

My research interests lie in the study and modeling of multiphase and geophysical systems, in particular with application to volcanic eruptions.

GitHub Events

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Last Year
  • Member event: 1
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Dependencies

environment.yml pypi
  • certifi ==2025.1.31
  • cftime ==1.6.4.post1
  • charset-normalizer ==3.4.1
  • contourpy ==1.3.1
  • cycler ==0.12.1
  • fonttools ==4.57.0
  • idna ==3.10
  • imageio ==2.37.0
  • imageio-ffmpeg ==0.6.0
  • joblib ==1.4.2
  • kiwisolver ==1.4.8
  • matplotlib ==3.10.1
  • natsort ==8.4.0
  • netcdf4 ==1.7.2
  • numpy ==2.2.4
  • packaging ==24.2
  • pandas ==2.2.3
  • pillow ==11.2.1
  • platformdirs ==4.3.7
  • pooch ==1.8.2
  • psutil ==7.0.0
  • pyparsing ==3.2.3
  • python-dateutil ==2.9.0.post0
  • pytz ==2025.2
  • pyvista ==0.44.2
  • requests ==2.32.3
  • scikit-learn ==1.6.1
  • scipy ==1.15.2
  • scooby ==0.10.0
  • six ==1.17.0
  • threadpoolctl ==3.6.0
  • typing-extensions ==4.13.2
  • tzdata ==2025.2
  • urllib3 ==2.4.0
  • vtk ==9.3.1
  • xarray ==2025.3.1