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lrsday-patch

Patch for LRSDAY v1.6 for Debian-based and SUSE-based OS.

https://github.com/nicolo-tellini/lrsday-patch

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.8%) to scientific vocabulary

Keywords

bugfix genome-annotation genome-assembly lrsday nanopore-sequencing pacbio-sequencing yeast
Last synced: 9 months ago · JSON representation ·

Repository

Patch for LRSDAY v1.6 for Debian-based and SUSE-based OS.

Basic Info
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
bugfix genome-annotation genome-assembly lrsday nanopore-sequencing pacbio-sequencing yeast
Created almost 4 years ago · Last pushed over 2 years ago
Metadata Files
Readme License Citation

README.md

LRSDAY Patch

License: MIT

Patch for LRSDAY v1.6 © Jia-Xing Yue for Debian-based OS. The debugging was performed with Ubuntu 18.04 and OpenSUSE Leap 15.4.

Content

:openfilefolder: :

  • installer_patch.sh: a redesigned installer that simplify the process of debugging,
  • soft: a dir that contains individual installation scripts for the software and collects Log and Err files,
  • Project_Template: a dir that contains the scripts to run LRSDAY modules [note],
  • INSTRUCTIONS_DEBIAN_BASED_OS.md: a file with the instructions and dependencies,
  • INSTRUCTIONS_SUSE_BASED_OS.md: a file with the instructions and dependencies.

[note] the scripts do not significatly change in the content. Only paths and option/function names have been adjusted to meet the requirements of both up and downgraded software.

Other files: - SOFTWARECHANGES_DEBIAN_BASED_OS.md: a list of up/downgraded software, - SOFTWARECHANGES_SUSE_BASED_OS.md: a list of up/downgraded software, - installer_patch_LRSDAY.jpg: the picture in the README.md, - LICENSE.md: the license, - CITATION.cff: the citation info.

Installer

How the new installer acts:

If you install on SUSE please edit installer_patch.sh and change SUSE="no" in SUSE="yes".

Commitment

:heavycheckmark: We monitor the link integrity of each software by means LICO1, monthly.

[1] Nicolò, T. (2022). LInk COntroller (LICO) (Version 1.0) [Computer software]. https://github.com/nicolo-tellini/LICO

Citation

:pagefacingup: Please, if you use this patch cite this GitHub repo along with LRSDAY. Thank you very much!

Disclaimer

:heavyexclamationmark: FOLLOWING THE INSTRUCTION YOU ARE GOING TO INSTALL PACKAGES WITH SUPERUSER PRIVILEGES DURING THE PRE-INSTALLATION PROCESS. IF YOU ARE NOT AWARE OF WHAT YOU ARE DOING CONSULT WITH EITHER YOUR SYSTEM ADMINISTRATOR OR SENIOR BIO/INFORMATICIAN. NO SUPERUSER PRIVILEGES ARE REQUIRED BY THE MAIN SOFTWARE INSTALLER.

Owner

  • Name: nt
  • Login: nicolo-tellini
  • Kind: user

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Nicolò"
  given-names: "Tellini"
  orcid: "https://orcid.org/0000-0002-2406-2906"
title: "LRSDAY-Patch"
version: 1.0
date-released: 2022-09-01
url: "https://github.com/nicolo-tellini/LRSDAY-Patch"

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