sbcdata

Laboratory Diagnostics from Septic and Non-septic Patients Used in the AMPEL Project

https://github.com/ampel-leipzig/sbcdata

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 8 DOI reference(s) in README
✓
Academic publication links
Links to: zenodo.org
○
Academic email domains
○
Institutional organization owner
○
JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (14.0%) to scientific vocabulary

Keywords

data laboratory r-package r-stats sepsis

Last synced: 4 months ago · JSON representation

Repository

Laboratory Diagnostics from Septic and Non-septic Patients Used in the AMPEL Project

Basic Info

Host: GitHub
Owner: ampel-leipzig
License: cc-by-4.0
Language: R
Default Branch: main
Homepage: https://ampel-leipzig.github.io/sbcdata/
Size: 222 MB

Statistics

Stars: 2
Watchers: 1
Forks: 2
Open Issues: 0
Releases: 2

Topics

data laboratory r-package r-stats sepsis

Created about 4 years ago · Last pushed almost 2 years ago

Metadata Files

Readme Changelog License Citation Codemeta

sbcdata

Installation

You can install the released version of sbcdata from directly from github:

```r

install.packages("remotes")

remotes::install_github("ampel-leipzig/sbcdata") ```

About the data

The data were collected as part of the AMPEL project (Analysis and Reporting System for the Improvement of Patient Safety through Real-Time Integration of Laboratory Findings). They include administration data, sepsis labels based on ICD10 codes and laboratory diagnostics from patients admitted to the University Hospital Leipzig between Januar 2014 and December 2021 and to the University Hospital Greifswald between Januar 2015 and December 2020, respectively. Additionally it provides functions to generate a similar dataset from MIMIC-IV Johnson et al. 2021.

License

The datasets are available under the CC-BY license.

Citation

To cite the sbcdata package, please use:

Applying Machine Learning to Blood Count Data Predicts Sepsis with ICU Admission. D. Steinbach, P. C. Ahrens, M. Schmidt, M. Federbusch, L. Heuft, Ch. Lbbert, M. Nauck, M. Grndling, B. Isermann, S. Gibb, Th. Kaiser 2024. Clinical Chemistry. DOI: 10.1093/clinchem/hvae001.

Owner

Name: AMPEL
Login: ampel-leipzig
Kind: organization
Location: Leipzig

Website: https://www.ampel.care/
Repositories: 3
Profile: https://github.com/ampel-leipzig

CodeMeta (codemeta.json)

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GitHub Events

Total

Watch event: 3
Fork event: 1

Last Year

Watch event: 3
Fork event: 1

Dependencies

.github/workflows/R-CMD-check.yaml actions

actions/checkout v4 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.5.0 composite
actions/checkout v4 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/test-coverage.yaml actions

actions/checkout v4 composite
actions/upload-artifact v4 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

DESCRIPTION cran

R >= 4.1 depends
data.table * depends
DiagrammeR * suggests
gtsummary * suggests
knitr * suggests
rmarkdown * suggests
testthat >= 3.0.0 suggests
viridisLite * suggests

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

sbcdata

Science Score: 49.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

sbcdata

Installation

install.packages("remotes")

About the data

License

Citation

Owner

CodeMeta (codemeta.json)

GitHub Events

Total

Last Year

Dependencies