evolution-correction

Rmarkdown and data for supporting material for correction to Kulbaba et al. (2019)

https://github.com/cjgeyer/evolution-correction

Science Score: 67.0%

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CITATION.cff file
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Found 3 DOI reference(s) in README
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Links to: zenodo.org
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Repository

Rmarkdown and data for supporting material for correction to Kulbaba et al. (2019)

Basic Info

Host: GitHub
Owner: cjgeyer
License: cc0-1.0
Language: TeX
Default Branch: main
Size: 1.75 MB

Statistics

Stars: 0
Watchers: 2
Forks: 0
Open Issues: 0
Releases: 4

Created over 3 years ago · Last pushed over 3 years ago

Metadata Files

Readme License Citation

README.md

This git repo holds the files for the supplementary material for a correction to the paper

Mason W. Kulbaba, Seema N. Sheth, Rachel E. Pain, Vincent M. Eckhart and Ruth G. Shaw (2019).
Additive genetic variance for lifetime fitness and the capacity for adaptation in an annual plant.
Evolution 73:1746–1758.
doi: 10.1111/evo.13830.

The correction has already been accepted by Evolution and has manuscript number 22-0427.

The supplementary material is the PDF file vaw.pdf in this repo.

This file is fully reproducible, to reproduce it download the repo and do

Rscript -e 'rmarkdown::render("vaw.Rmd")'

at the operating system command line to make

vaw.pdf

which is the supplementary material for the correction.

This takes several hours to run, but caches results so that runs after that take less than a minute.

Needs R and CRAN packages

rmarkdown
bookdown
aster
numDeriv
kableExtra

In R

install.packages(c("bookdown", "aster", "numDeriv", "kableExtra"))

will install these packages.

Also needs the files

csdata.csv
gcdata.csv
kwdata.csv
foo.bib
journal-of-the-royal-statistical-society.csl

(which are needed to render the Rmarkdown and are in this git repo).

The csv files are the data for the original paper, which has not changed for this correction. Only the analysis in the Rmarkdown file differs.

Owner

Name: Charles J. Geyer
Login: cjgeyer
Kind: user
Location: Minneapolis, Minnesota, USA
Company: University of Minnesota School of Statistics

Website: http://www.stat.umn.edu/~charlie/
Repositories: 18
Profile: https://github.com/cjgeyer

I am a professor in the School of Statistics, University of Minnesota. Most repos here are R packages, some for CRAN and some for teaching.

Citation (CITATION.cff)

cff-version: 1.2.0
message: "please cite as below"
authors:
  - family-names: Geyer
    given-names: "Charles J."
    orcid: https://orcid.org/0000-0003-1471-1703
  - family-names: Kulbaba
    given-names: "Mason W."
    orcid: https://orcid.org/0000-0003-0619-7089
  - family-names: Sheth
    given-names: "Seema N."
    orcid: https://orcid.org/0000-0001-8284-7608
  - family-names: Pain
    given-names: "Rachel E."
  - family-names: Eckhart
    given-names: "Vincent M."
  - family-names: Shaw
    given-names: "Ruth G."
    orcid: https://orcid.org/0000-0001-5980-9291
contact:
  - affiliation: "School of Statistics, University of Minnesota"
    email: geyer@umn.edu
    family-names: Geyer
    given-names: Charles
  - affiliation: "Department of Mathematics and Science, Our Lady of the Lake University"
    email: mkulbaba@ollusa.edu
    family-names: Kulbaba
    given-names: Mason
  - affiliation: "Department of Plant and Microbial Biology, North Carolina State University"
    email: ssheth3@ncsu.edu
    family-names: Sheth
    given-names: Seema
  - affiliation: "Ecology, Evolution and Behavior Graduate Program, University of Minnesota"
    email: repain@umn.edu
    family-names: Pain
    given-names: Rachel
  - affiliation: "Department of Biology, Grinnell College"
    email: eckhart@grinnell.edu
    family-names: Eckhart
    given-names: Vincent
  - affiliation: "Department of Ecology, Evolution and Behavior, University of Minnesota"
    email: shawx016@umn.edu
    family-names: Shaw
    given-names: Ruth
title: "Correction for Kulbaba et al. (2019)"
doi: 10.5281/zenodo.1234
date-released: 2022-08-20

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