Recent Releases of sv-callers
sv-callers - v1.2.1
- fixed named wildcards in s/p modes (#76)
- updated to Viola-SV v1.0.2
- Python
Published by arnikz over 3 years ago
sv-callers - v1.2.0
- integrated Viola-SV into the post-processing step to harmonize SV types (#75)
- Python
Published by arnikz over 3 years ago
sv-callers - v1.1.3
- fixed filtering of somatic SV types in DELLY (#68)
- updated testing infra
- Travis CI -> GitHub Actions (#55)
- Docker Hub -> GitHub Container Registry (#71)
- Python
Published by arnikz about 4 years ago
sv-callers - v1.1.2
- update Xenon CLI (v3.0.5): fixed Slurm 19 issue (#40)
- speed up conda install (#49)
- Python
Published by arnikz over 5 years ago
sv-callers - v1.1.1
- added
environment.yamlto install initial dependencies via Conda- updated Xenon CLI (v3.0.4):
--cores-per-task {threads}replaces--procs-per-node {threads}and--start-single-processargs - included jq JSON processor to query job accounting output by Xenon CLI (optional)
- updated Xenon CLI (v3.0.4):
- updated Docker images with batch schedulers for CI testing
- fixed file error handling and unit tests
- Python
Published by arnikz over 5 years ago
sv-callers - Version 1.1.0
- enabled both single-sample (germline) and paired-sample (somatic) SV analyses
- added post-processing steps (i.e., SV quality filtering and/or excluding regions with problematic mappability)
- updated Xenon CLI (v3.0.0) and included optional use of temporary disk space
- added Docker images with batch schedulers for CI testing
- bug fixes
- Python
Published by arnikz almost 7 years ago
sv-callers - Version 1.0.0
- initial release supporting SV detection in paired tumor/normal samples
- Python
Published by arnikz almost 8 years ago