pylustrator
pylustrator: code generation for reproducible figures for publication - Published in JOSS (2020)
Science Score: 100.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 4 DOI reference(s) in README and JOSS metadata -
○Academic publication links
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✓Committers with academic emails
1 of 9 committers (11.1%) from academic institutions -
○Institutional organization owner
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✓JOSS paper metadata
Published in Journal of Open Source Software
Keywords
Keywords from Contributors
Scientific Fields
Repository
Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have different formats and shapes, the visualisations often have to be adapted to reflect the data as well as possible. We developed Pylustrator, an interface to directly edit python generated matplotlib graphs to finalize them for publication. Therefore, subplots can be resized and dragged around by the mouse, text and annotations can be added. The changes can be saved to the initial plot file as python code.
Basic Info
Statistics
- Stars: 878
- Watchers: 16
- Forks: 41
- Open Issues: 18
- Releases: 11
Topics
Metadata Files
README.md
Pylustrator is a software to prepare your figures for publication in a reproducible way. This means you receive a figure representing your data and alongside a generated code file that can exactly reproduce the figure as you put them in the publication, without the need to readjust things in external programs.
Pylustrator offers an interactive interface to find the best way to present your data in a figure for publication. Added formatting and styling can be saved by automatically generated code. To compose multiple figures to panels, pylustrator can compose different subfigures to a single figure.
Please also refer to the Documentation for more information.
Issues, Questions, and Suggestions
Please submit your questions, suggestions, and bug reports to the Issue Tracker
Contributing
You want to contribute? Great! Contributing works best if you creat a pull request with your changes.
- Fork the project.
- Create a branch for your feature:
git checkout -b cool-new-feature - Commit your changes:
git commit -am 'My new feature' - Push to the branch:
git push origin cool-new-feature - Submit a pull request!
If you are unfamilar with pull requests, you find more information on pull requests in the github help
Owner
- Name: Richard Gerum
- Login: rgerum
- Kind: user
- Company: York University
- Repositories: 7
- Profile: https://github.com/rgerum
JOSS Publication
pylustrator: code generation for reproducible figures for publication
Authors
Department of Physics, University of Erlangen-Nürnberg, Germany
Editor
Lorena A Barba
Tags
reproducibility code generation interactive matplotlib plotting drag styleCitation (CITATION.bib)
@article{Gerum2020,
doi = {10.21105/joss.01989},
url = {https://doi.org/10.21105/joss.01989},
year = {2020},
publisher = {The Open Journal},
volume = {5},
number = {51},
pages = {1989},
author = {Richard Gerum},
title = {pylustrator: code generation for reproducible figures for publication},
journal = {Journal of Open Source Software}
}
GitHub Events
Total
- Issues event: 5
- Watch event: 161
- Delete event: 1
- Issue comment event: 9
- Push event: 8
- Pull request event: 8
- Fork event: 4
Last Year
- Issues event: 5
- Watch event: 161
- Delete event: 1
- Issue comment event: 9
- Push event: 8
- Pull request event: 8
- Fork event: 4
Committers
Last synced: 5 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| rgerum | r****m@y****e | 246 |
| rgerum | 1****m | 235 |
| JScheffer | 5****r | 6 |
| Andy Shapiro | a****o@i****m | 3 |
| Lorena A. Barba | l****a@g****u | 2 |
| yao | 5****7 | 2 |
| rraadd88 | r****e@g****m | 1 |
| dependabot[bot] | 4****] | 1 |
| S J Palmer | s****4@g****m | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 58
- Total pull requests: 19
- Average time to close issues: 4 months
- Average time to close pull requests: about 1 month
- Total issue authors: 42
- Total pull request authors: 8
- Average comments per issue: 1.95
- Average comments per pull request: 0.95
- Merged pull requests: 14
- Bot issues: 0
- Bot pull requests: 1
Past Year
- Issues: 4
- Pull requests: 6
- Average time to close issues: 5 months
- Average time to close pull requests: 11 days
- Issue authors: 4
- Pull request authors: 1
- Average comments per issue: 2.0
- Average comments per pull request: 0.5
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- rgerum (13)
- xihajun (3)
- JoostScheffer (2)
- fconil (2)
- derketo (1)
- ijpulidos (1)
- DeepaMahm (1)
- cycomanic (1)
- trettelbach (1)
- King-of-Infinite-Space (1)
- shizkaz (1)
- benoitrosa (1)
- Atcold (1)
- tfiers (1)
- PedroLormendez (1)
Pull Request Authors
- yao24247 (6)
- JoostScheffer (5)
- dependabot[bot] (2)
- labarba (2)
- sp94 (2)
- marksmayo (1)
- JacksonBurns (1)
- rraadd88 (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
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Total downloads:
- pypi 130 last-month
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Total dependent packages: 0
(may contain duplicates) -
Total dependent repositories: 4
(may contain duplicates) - Total versions: 25
- Total maintainers: 1
pypi.org: pylustrator
Adds interactivity to arrange panels in matplotlib.
- Homepage: https://github.com/rgerum/pylustrator
- Documentation: https://pylustrator.readthedocs.io/
- License: GPLv3
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Latest release: 1.3.0
published almost 3 years ago
Rankings
Maintainers (1)
conda-forge.org: pylustrator
- Homepage: https://github.com/rgerum/pylustrator
- License: GPL-3.0-or-later
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Latest release: 1.2.1
published about 3 years ago
Rankings
Dependencies
- mock *
- nbsphinx *
- sphinx-autobuild *
- sphinx_rtd_theme *
- sphinxcontrib-bibtex *
- matplotlib *
- nbsphinx *
- pyside2 *
- qtpy *
- sphinxcontrib-bibtex *
- matplotlib *
- natsort *
- numpy *
- pyqt5 *
- qtawesome *
- qtpy *
- scikit-image *
- JRubics/poetry-publish v1.13 composite
- actions/checkout v3 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- PyQt5 *
- coverage *
- matplotlib *
- natsort *
- numpy *
- pytest *
- qtawesome *
- qtpy *
- scikit-image *
- PyQt5 >=5.6
- matplotlib >=2.0.2
- natsort >=2.0.0
- numpy >=1.0.3
- python ^3.8
- qtawesome >=0.5.0
- scikit-image >=0.7.0
- colorama 0.4.6
- contourpy 1.3.0
- cycler 0.12.1
- exceptiongroup 1.2.2
- fonttools 4.55.0
- imageio 2.36.0
- importlib-resources 6.4.5
- iniconfig 2.0.0
- kiwisolver 1.4.7
- lazy-loader 0.4
- matplotlib 3.9.2
- natsort 8.4.0
- networkx 3.2.1
- numpy 2.0.2
- packaging 24.2
- pillow 11.0.0
- pluggy 1.5.0
- pyparsing 3.2.0
- pyqt5 5.15.11
- pyqt5-qt5 5.15.15
- pyqt5-sip 12.15.0
- pytest 7.4.4
- python-dateutil 2.9.0.post0
- qtawesome 1.3.1
- qtpy 2.4.2
- scikit-image 0.24.0
- scipy 1.13.1
- six 1.16.0
- tifffile 2024.8.30
- tomli 2.1.0
- zipp 3.21.0