https://github.com/digital-botanical-gardens-initiative/ms-metadata-fetcher
https://github.com/digital-botanical-gardens-initiative/ms-metadata-fetcher
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.7%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: digital-botanical-gardens-initiative
- License: other
- Language: Python
- Default Branch: main
- Size: 67.4 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
ms-metadata-fetcher
A script to retrieve MS data and the associated metadata
- Github repository: https://github.com/edouardbruelhart/ms-metadata-fetcher/
- Documentation https://edouardbruelhart.github.io/ms-metadata-fetcher/
Running the fetcher
Move to ms_metadata_fetcher directory
bash
cd ms_metadata_fetcher
Make sure that the .env is present (you have an example with .env.example)
And run the following command:
bash
./launcher.sh
Getting started with your project
First, create a repository on GitHub with the same name as this project, and then run the following commands:
bash
git init -b main
git add .
git commit -m "init commit"
git remote add origin git@github.com:edouardbruelhart/ms-metadata-fetcher.git
git push -u origin main
Finally, install the environment and the pre-commit hooks with
bash
make install
You are now ready to start development on your project! The CI/CD pipeline will be triggered when you open a pull request, merge to main, or when you create a new release.
To finalize the set-up for publishing to PyPi or Artifactory, see here. For activating the automatic documentation with MkDocs, see here. To enable the code coverage reports, see here.
Releasing a new version
Repository initiated with fpgmaas/cookiecutter-poetry.
Owner
- Name: The Digital Botanical Garden Initiative
- Login: digital-botanical-gardens-initiative
- Kind: organization
- Repositories: 3
- Profile: https://github.com/digital-botanical-gardens-initiative
GitHub Events
Total
- Push event: 1
Last Year
- Push event: 1
Dependencies
- actions/cache v3 composite
- actions/setup-python v4 composite
- snok/install-poetry v1 composite
- ./.github/actions/setup-poetry-env * composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- snok/install-poetry v1 composite
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- packaging 24.0
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- virtualenv 20.26.2
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- pandas ^2.2.2
- pandas-stubs ^2.2.2.240514
- pytest-cov ^5.0.0
- python >=3.9,<4.0
- python-dotenv ^1.0.1
- requests ^2.31.0
- types-requests ^2.31.0.20240406