Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/digital-botanical-gardens-initiative/dbgi-ro-crate

Sandbox for RO Crate

https://github.com/digital-botanical-gardens-initiative/dbgi-ro-crate

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.4%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Sandbox for RO Crate

Basic Info
  • Host: GitHub
  • Owner: digital-botanical-gardens-initiative
  • Language: Python
  • Default Branch: main
  • Size: 9.77 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 1 year ago · Last pushed 11 months ago
Metadata Files
Readme

README.md

Following https://www.researchobject.org/packagingdatawith_ro-crate/

The RO crate has been created and is observable at http://www.dbgi.org/dbgi-ro-crate/crate1/ro-crate-preview.html

Now what would be great would be to understand mechanisms available to describe the data at a finer granularity. E.g. describe the headers in docs/crate1/data.csv

FrictionLess data seems to be a good candidate for this. It would howevere be simpler to have everything under the same framework. Their is a discussion on the topic at https://github.com/ResearchObject/ro-crate/issues/27. It is still Open.

Dig arcp https://pure.manchester.ac.uk/ws/portalfiles/portal/76956641/arcp.html

FrictionLess data

A FrictionLess data schemas (is that a TableSchema of a Data Resource ? ) is created using the following command

bash frictionless describe docs/crate1/data.csv --yaml > docs /crate1/data.resource.yaml

SIS

People at SIS have been working on the modelling of complex xlsx sheets through their RO Crate interoperability specs https://sissource.ethz.ch/sispub/ro-crate/-/blob/main/interoperability/0.1.x/examples/ro-crate-1.1/ro-crate-metadata/ro-crate-metadata.json?ref_type=heads. This has been announced and discussed at https://github.com/ResearchObject/ro-crate/issues/399

Ideas and tasks

  • Chatting with SIS people today (Juan and Andreas), proposed them to add a hash (sha2546 or md5) of the files to ro-crates, I think this could be done also for ROCrate 1.1, wether or not files are described in the schema
  • Better examples should be established to showcase the possibilities open by modelling tabular files in the ROCrate metadata.
  • Fork https://pypi.org/project/rocrate/ and try to replicate https://sissource.ethz.ch/sispub/ro-crate/-/blob/main/interoperability/0.1.x/

They have shared https://github.com/digital-botanical-gardens-initiative/dbgi-ro-crate/blob/d4f3111ae0eb839ecac47a85c136f15e47355761/src/sis/ro-crate-metadata.json and https://github.com/digital-botanical-gardens-initiative/dbgi-ro-crate/blob/d4f3111ae0eb839ecac47a85c136f15e47355761/src/sis/WriteExample.java

Owner

  • Name: The Digital Botanical Garden Initiative
  • Login: digital-botanical-gardens-initiative
  • Kind: organization

GitHub Events

Total
  • Push event: 5
Last Year
  • Push event: 5