Recent Releases of metabarflow
metabarflow - Correct bugs in taxonomy script and add more info to output
In some cases, a taxid has no match in the taxonomy database (see details in the README file). The initial code for handling this was erroneous, and caused some sequences to be misclassified. Also, in some cases the final identification (score.id) was incorrectly determined, due to the %identity being interpreted as characters instead of as numerals, or due to the classification scores varying very slightly from 100 because of computational error. These issues have been solved, and additionally, two informative columns have been added to the main output table, namely the scientific name of the top BLAST hit, and the indication of possible misidentification.
- R
Published by evaegelyng over 3 years ago
metabarflow - v0.1.0
- Added important note on error modelling of Illumina NovaSeq data to README.md
- Updated optional synonym search in taxonomy.r to match improved taxonomic identification ("score.id")
- Improved explanations in taxonomy.r and in the README.md
- Added Caitlin Kim Frankish to acknowledgements
- R
Published by evaegelyng about 4 years ago