Science Score: 57.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (1.1%) to scientific vocabulary
Last synced: 6 months ago
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Repository
Candida albicans co-expression
Basic Info
- Host: GitHub
- Owner: momeara
- Language: R
- Default Branch: master
- Size: 8.9 MB
Statistics
- Stars: 3
- Watchers: 1
- Forks: 2
- Open Issues: 0
- Releases: 0
Created over 5 years ago
· Last pushed about 3 years ago
Metadata Files
Readme
Citation
README.md
Candida albicans Co-expression analysis
Teresa R. O'Meara, Matthew J. O'Meara DeORFanizing Candida albicans Genes using Coexpression https://doi.org/10.1128/mSphere.01245-20
Install
install.packages("remotes")
remotes::install_github("momeara/CalCEN")
Owner
- Name: Matthew O'Meara
- Login: momeara
- Kind: user
- Location: Ann Arbor, MI
- Company: University of Michigan
- Website: http://docking.org/~momeara/
- Twitter: momeara
- Repositories: 11
- Profile: https://github.com/momeara
I work in computational pharmacology at the University of Michigan and I'm interest are statistical analysis of high-content screens and virtual screening
Citation (CITATION.cff)
cff-version: 1.1.0
message: "If you use the CalCEN package, please cite it as below."
authors:
- family-names: O'Meara
given-names: Matthew
affiliation: "University of Michigan"
email: "maom@umich.edu"
orcid: https://orcid.org/0000-0002-3128-5331
- family-names: O'Meara
given-names: Teresa
affiliation: "University of Michigan"
email: "tromeara@umich.edu"
orcid: https://orcid.org/0000-0002-8901-0154
title: "CalCEN"
version: 0.0.1
GitHub Events
Total
Last Year
Dependencies
DESCRIPTION
cran
- R >= 3.6.0 depends
- BiocGenerics >= 0.36.0 imports
- DelayedArray >= 0.16.0 imports
- DelayedMatrixStats >= 1.12.0 imports
- EGAD >= 1.16.0 imports
- GO.db >= 3.11.4 imports
- Hotelling >= 1.0 imports
- Matrix.utils >= 0.9.8 imports
- S4Vectors >= 0.28.0 imports
- SRAdb >= 1.50.0 imports
- SingleCellExperiment >= 1.12.0 imports
- SummarizedExperiment >= 1.20.0 imports
- UpSetR >= 1.4.0 imports
- argparser >= 0.6 imports
- batchelor >= 1.6.1 imports
- dplyr >= 0.8.3 imports
- geomedb >= 2.0.1 imports
- ggplot2 >= 1.0.1 imports
- gplots >= 3.0.1.2 imports
- hdf5r >= 1.3.3 imports
- huge >= 1.3.4.1 imports
- intervals >= 0.15.2 imports
- limma >= 3.46.0 imports
- monocle3 >= 0.2.3.0 imports
- optparse >= 1.6.6 imports
- plyr >= 1.8.6 imports
- reshape2 >= 1.4.4 imports
- scales >= 1.1.0 imports
- scales >= 1.0.0 imports
- seqinr >= 4.2 imports
- seriation >= 1.2 imports
- stringr >= 1.4.0 imports
- tidyr >= 1.0.0.9000 imports