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python-intermediate-inflammation

https://github.com/lionandjelka/python-intermediate-inflammation

Science Score: 44.0%

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    Low similarity (13.7%) to scientific vocabulary
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Repository

Basic Info
  • Host: GitHub
  • Owner: lionandjelka
  • Language: Python
  • Default Branch: main
  • Size: 58.6 KB
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  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Created over 3 years ago · Last pushed over 3 years ago
Metadata Files
Readme Citation

README.md

Inflam

Continuous Integration build in GitHub Actions Inflam is a data management system written in Python that manages trial data used in clinical inflammation studies.

Main features

Here are some key features of Inflam:

  • Provide basic statistical analyses over clinical trial data
  • Ability to work on trial data in Comma-Separated Value (CSV) format
  • Generate plots of trial data
  • Analytical functions and views can be easily extended based on its Model-View-Controller architecture

Prerequisites

Inflam requires the following Python packages:

  • NumPy - makes use of NumPy's statistical functions
  • Matplotlib - uses Matplotlib to generate statistical plots

The following optional packages are required to run Inflam's unit tests:

  • pytest - Inflam's unit tests are written using pytest
  • pytest-cov - Adds test coverage stats to unit tes

Installation/deployment: Requirements

Python>3.7 cycler==0.11.0 fonttools==4.28.1 kiwisolver==1.3.2 matplotlib==3.5.0 numpy==1.21.4 packaging==21.2 Pillow==8.4.0 pyparsing==2.4.7 python-dateutil==2.8.2 setuptools-scm==6.3.2 six==1.16.0 tomli==1.2.2

In command prompt type

python3 inflammation-analysis.py

Basic usage:

for testing install pytest

pip3 install pytest

pytest tests/test_models.py

basic usage in Python shell:

import inflammation from inflammation import models, serializers,views

Contributing: Contributors to open source are sought, with emphasize on statitistical analysis and vizualization

Contact information/getting help:

E: SER-SAG.Team@math.rs

Credits/Acknowledgements:

Southempton University

Citation:

https://github.com/lionandjelka/python-intermediate-inflammation/blob/main/CITATION.cff

Licence: open source

Owner

  • Login: lionandjelka
  • Kind: user

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: Inflammation exercise
message: please cite it in your publications
type: software
authors:
  - given-names: Sherlock
    family-names: Holmes
    email: holmes@gmail.com
    affiliation: Privat agency

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Dependencies

requirements.txt pypi
  • Pillow ==9.2.0
  • attrs ==21.4.0
  • coverage ==6.4.1
  • cycler ==0.11.0
  • fonttools ==4.34.4
  • importlib-metadata ==4.12.0
  • iniconfig ==1.1.1
  • kiwisolver ==1.4.3
  • matplotlib ==3.5.2
  • numpy ==1.21.6
  • packaging ==21.3
  • pluggy ==1.0.0
  • py ==1.11.0
  • pyparsing ==3.0.9
  • pytest ==7.1.2
  • pytest-cov ==3.0.0
  • python-dateutil ==2.8.2
  • six ==1.16.0
  • tomli ==2.0.1
  • typing_extensions ==4.3.0
  • zipp ==3.8.0