qechairquality

This repository contains the data and code for a manuscript on hospital air quality data

https://github.com/global-health-engineering/qechairquality

Repository

This repository contains the data and code for a manuscript on hospital air quality data

README.Rmd

---
output: github_document
editor: 
  markdown: 
    wrap: 72
bibliography: references.bib
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%",
  message = FALSE,
  warning = FALSE
)

library(epoxy)
library(dplyr)
library(readr)
library(stringr)
```

# qechairquality



[![DOI](https://zenodo.org/badge/418826351.svg)](https://zenodo.org/badge/latestdoi/418826351)
[![R-CMD-check](https://github.com/Global-Health-Engineering/qechairquality/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/Global-Health-Engineering/qechairquality/actions/workflows/R-CMD-check.yaml)



## Overview

This packages contains data collected as part a research study at Queen
Elizabeth Central Hospital (QECH) in Blantyre Malawi. Particulate matter
measurements (PM 2.5 & PM 10) were taken in 5-minute intervals for at
eight sensor locations over two months.

## Manuscript

This data was used for a manuscript prepared for a journal. The
reproducible manuscript can be found at

[@schöbitz2023].

## Installation

You can install the development version of qechairquality from
[GitHub](https://github.com/) with:

``` r
# install.packages("devtools")
devtools::install_github("Global-Health-Engineering/qechairquality")
```

Alternatively, you can download the individual datasets as a CSV or XLSX
file from the table below.

```{r, echo=FALSE}

package_name <- "qechairquality"
extdata_path <- paste0("https://github.com/Global-Health-Engineering/", package_name, "/raw/main/inst/extdata/")

read_csv("data-raw/dictionary.csv") |> 
  distinct(file_name) |> 
  mutate(file_name = str_remove(file_name, ".rda")) |> 
  rename(dataset = file_name) |> 
  mutate(
    CSV = paste0("[Download CSV](", extdata_path, dataset, ".csv)"),
    XLSX = paste0("[Download XLSX](", extdata_path, dataset, ".xlsx)")
  ) |> 
  knitr::kable()
```

## Data

The package provides access to two dataset.

```{r}
library(qechairquality)
```

```{epoxy}
The `qechairquality` data set has {ncol(qechairquality)} variables and {nrow(qechairquality)} observations. For an overview of the variable names, see the following table.  
```

```{r, eval=FALSE}
qechairquality
```

```{r, echo=FALSE}
readr::read_csv("data-raw/dictionary.csv") |> 
  dplyr::filter(file_name == "qechairquality.rda") |> 
  dplyr::select(variable_name:description) |> 
  knitr::kable()
```

```{r, eval=FALSE}
locations
```

```{r, echo=FALSE}
readr::read_csv("data-raw/dictionary.csv") |> 
  dplyr::filter(file_name == "locations.rda") |> 
  dplyr::select(variable_name:description) |> 
  knitr::kable()
```

## License

Data are available as
[CC-BY](https://github.com/Global-Health-Engineering/qechairquality/blob/main/LICENSE.md).

## References

Owner

Citation (CITATION.cff)

# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.4.1
# See also: https://docs.ropensci.org/cffr/
# -----------------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "qechairquality" in publications use:'
type: software
license: CC-BY-4.0
title: 'qechairquality: Air Quality Data at Queen Elizabeth Central Hospital (QECH),
  Blantyre, Malawi'
version: 0.0.1
doi: 10.5281/zenodo.7825679
abstract: Air quality data with measurements in 5-minute intervals for particulate
  matter (PM 2.5 & PM 10) at eight sensor locations over two months at Queen Elizabeth
  Central Hospital (QECH) in Blantyre, Malawi.
authors:
- family-names: Schöbitz
  given-names: Lars
  email: lschoebitz@ethz.ch
  orcid: https://orcid.org/0000-0003-2196-5015
- family-names: Tilley
  given-names: Elizabeth
  email: tilleye@ethz.ch
  orcid: https://orcid.org/0000-0002-2095-9724
- family-names: Kalina
  given-names: Marc
  email: mkalina@ethz.ch
  orcid: https://orcid.org/0000-0002-6335-3845
- family-names: Kwangulero
  given-names: Jonathan
  email: kwangulero@gmail.com
  orcid: https://orcid.org/0000-0002-4050-5121
- family-names: Vijay
  given-names: Saloni
  email: svijay@ethz.ch
  orcid: https://orcid.org/0000-0001-5883-5308
- family-names: Chilunga
  given-names: Hope
  email: hchilunga@poly.ac.mw
  orcid: https://orcid.org/0000-0003-4216-6319
url: https://global-health-engineering.github.io/qechairquality/
contact:
- family-names: Schöbitz
  given-names: Lars
  email: lschoebitz@ethz.ch
  orcid: https://orcid.org/0000-0003-2196-5015

GitHub Events