by-covid-kg
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.5%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: Fraunhofer-ITMP
- License: mit
- Language: Jupyter Notebook
- Default Branch: main
- Size: 59.3 MB
Statistics
- Stars: 1
- Watchers: 0
- Forks: 2
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
KG for BY-COVID
A Knowledge graph representation of compounds and associated biological entities in the BY-COVID project.
Current status
- Number of Nodes: 35952
- Number of Edges: 279462
- Human Proteins: 1347
- Assay: 15835
- Chemical/Compound: 4096
- Mechanism of Action: 739
- Pathway: 1513
- Disease: 1585
- SideEffect: 7420
- Biological Process: 2085
- Molecular Function: 1332
Please check the BYCOVIDupdate_August.ipynb for understanding step wise process of KG generation and KG statistics. The KG has been exported to formats such as graphml, sif and so on for visualizations in other platforms. For example, the graphml file can be imported to Cytoscape directly. These files are located in 'data\export' folder.
The KG is also registered in EMBL-EBI's BioModels https://www.ebi.ac.uk/biomodels/MODEL2209020001).
NEW!!
We have created a separate git for Monkeypox KG. Please find it at: https://github.com/Fraunhofer-ITMP/mpox-kg
We have almost moved all Monkeypox related stuffs to its own git.The files you find here are just backups and will be removed soon.
Owner
- Name: Fraunhofer-Institut für Translationale Medizin und Pharmakologie ITMP
- Login: Fraunhofer-ITMP
- Kind: organization
- Location: Germany
- Website: https://www.itmp.fraunhofer.de/
- Repositories: 7
- Profile: https://github.com/Fraunhofer-ITMP
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