metro - v2.1

version v2.1

• update docs for filtering (@slsevilla)
• adds netmhc to path (iss#22, @slsevilla)

Full Changelog: https://github.com/CCBR/METRO/compare/v2.0...v2.1

- Python
Published by slsevilla almost 2 years ago

metro - v2.0

What's Changed

• docs: update CITATION.cff by @kelly-sovacool in https://github.com/CCBR/METRO/pull/14
• add CHANGELOG (iss#19, @slsevilla)
• removes RAY from running (iss#17, @slsevilla)
• adds metro_script, as temp workflow manager (iss#18, @slsevilla)

- fixes prepare outdir bug (iss#15, @slsevilla)

New Contributors

• @kelly-sovacool made their first contribution in https://github.com/CCBR/METRO/pull/14

Full Changelog: https://github.com/CCBR/METRO/compare/v1.4...v2.0

- Python
Published by slsevilla about 2 years ago

metro - version v1.4

update documentation, add test data, update dependency checks

- Python
Published by slsevilla over 3 years ago

metro - v1.3

updated documentation with mkdocs creating Zenodo link

- Python
Published by slsevilla over 3 years ago

metro - Release v1.2.0

AASAP: v1.2.0

Highlights - Includes new handler for dynamically reading in TSV or TSV-like (.vcf or .maf or .txt) input files - Output file now includes entire WT AA sequence and subset AA sequence

- Python
Published by skchronicles over 4 years ago

metro - Release v1.1.0

First major release of AASAP

• Builds reference files given a GTF and reference FASTA
• Contains parser for MAF-like excel files
• HGVS parser for coding DNA terms
  • Subsitution, deletions, indels, insertions, and duplications
• Mutates sequence based on HGVS term
• Translate DNA to AA sequence
• Truncate AA sequence relative to mutation start site

- Python
Published by skchronicles over 4 years ago