breast_cancer
A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).
Science Score: 39.0%
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○CITATION.cff file
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✓.zenodo.json file
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✓DOI references
Found 6 DOI reference(s) in README -
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○Scientific vocabulary similarity
Low similarity (11.6%) to scientific vocabulary
Keywords
Repository
A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).
Basic Info
- Host: GitHub
- Owner: pasmopy
- License: apache-2.0
- Language: Python
- Default Branch: master
- Homepage: https://www.cell.com/iscience/fulltext/S2589-0042(22)00214-0
- Size: 302 MB
Statistics
- Stars: 6
- Watchers: 2
- Forks: 5
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
README.md
The Pasmopy Project: Breast Cancer
This repository contains modeling and analysis code for the following paper:
- Imoto, H., Yamashiro, S. & Okada, M. A text-based computational framework for patient -specific modeling for classification of cancers. iScience 25, 103944 (2022). https://doi.org/10.1016/j.isci.2022.103944
Installation
Clone the package:
shell
$ git clone https://github.com/pasmopy/breast_cancer.git
Getting Started
Online documentation is hosted on GitHub Pages: https://pasmopy.github.io/breast_cancer.
Please also refer to the method paper: https://doi.org/10.1016/j.xpro.2022.101619.
Author
- Hiroaki Imoto
- Sawa Yamashiro
License
- Code license
Licensed under the Apache License, Version 2.0. For details, see the LICENSE file.
- Model parameters license
The model parameters are made available under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) license. You can find details at: https://creativecommons.org/licenses/by-nc-nd/4.0
Owner
- Name: Pasmopy
- Login: pasmopy
- Kind: organization
- Repositories: 2
- Profile: https://github.com/pasmopy
Using patient-specific in silico model to pave the way for personalized treatments.
GitHub Events
Total
- Create event: 3
- Issues event: 2
- Release event: 1
- Delete event: 2
- Issue comment event: 5
- Push event: 3
- Pull request event: 5
- Fork event: 1
Last Year
- Create event: 3
- Issues event: 2
- Release event: 1
- Delete event: 2
- Issue comment event: 5
- Push event: 3
- Pull request event: 5
- Fork event: 1
Dependencies
- biomass >=0.5.2,<0.6
- matplotlib >=3.0
- numpy >=1.17
- pandas >=0.24
- pasmopy ==0.1.0
- scipy >=1.6
- seaborn >=0.11.2
- actions/checkout v2 composite
- actions/setup-python v2 composite