nimpa - nimpa v2.6.3 stable

• support docker builds (#31 <- https://github.com/NiftyPET/NIPET/issues/48)

- Python
Published by amypad-bot over 2 years ago

nimpa - nimpa v2.6.2 stable

• fix build (#30 <- https://github.com/NiftyPET/NiftyPET/issues/19)
• docs: fix CI badge

- Python
Published by amypad-bot over 2 years ago

nimpa - nimpa v2.6.1 stable

• fixed potential problem with radioactivity injection time in dcmsort() (#29)
• minor CI/CD build updates
  • mark stable
  • use release bot

- Python
Published by amypad-bot over 2 years ago

nimpa - nimpa v2.6.0 stable

• add acr module (#28)
• add img.signa module (#28)
• misc prc & img updates (#28)
• fix/migrate pkg_resources => importlib_resources
• misc code tidy
• misc build/CI/framework/test updates
  • fix CI build & test workflow
  • add Py3.11, drop Py3.6 support
  • migrate setup.cfg => pyproject.toml
  • update pre-commit hooks

- Python
Published by github-actions[bot] over 2 years ago

nimpa - nimpa v2.5.1 stable

• better grouping of DICOM info (#27)
• minor bugfixes (#27)
• update build/test framework (#27)
  • bump ninst>=0.12.0 to drop tkinter installation dependency & for mcr constants
  • add py3.10 support
  • fix external PR tests

- Python
Published by amypad-bot over 3 years ago

nimpa - nimpa v2.5.0 stable

• fix misc bugs (#26)
• misc dcmsort & dcminfo updates
  • make acquisition time optional
  • use pathlib
  • fix tracer name bug
  • add injection time
  • data type correction
  • add (rounded) frame duration
  • 1 second tag time resolution
  • add acquisition time
  • support more file extensions
  • add study date
  • update sorting (group series by description or description + time)
• imtrimup: change default to outpath=None
• add rem_chars to sanitise folder/file names

- Python
Published by amypad-bot over 3 years ago

nimpa - nimpa v2.4.0 stable

• add MGH image file support
• add DICOM header institution extraction
• misc framework updates
• update & simplify installation (#25)
  • rename pydcm2niix => dcm2niix & make optional (https://github.com/rordenlab/dcm2niix/pull/605)
  • make niftyreg optional (requires C++/CUDA compiler) https://github.com/KCL-BMEIS/niftyreg/pull/80, fixes #22
  • make cuvec & numcu optional (requires C++/CUDA compiler) via cuvec-base
  • update ninst
  • drop PATHTOOLS, install_tools
  • better installation notes
  • cuda option (for nipet)

- Python
Published by amypad-bot over 3 years ago

nimpa - nimpa v2.3.0 stable

• add prc.conv_separable(output=None) & imsmooth(output_array=None)
• expose prc.conv_separable(sync=True) & imsmooth(sync=True)
• add prc.isub()
• add prc.centre_mass_corr()
• add regseg.resample_dipy()
• misc dcminfo() extraction & fixes
• use NumCu (https://github.com/AMYPAD/NumCu)
• use CuVec convenience converter functions (https://github.com/AMYPAD/CuVec/pull/17)
• use external dcm2niix package (#24 <- #23)
• use miutil.imio.nii functions
• fix img_resample(log) argument
• fix unused prc.nlm(output)
• misc build & test framework updates (#21)

- Python
Published by amypad-bot about 4 years ago

nimpa - nimpa v2.2.0 stable

• add NLM guided filter (#20)
• improc separable convolution fixes & updates (#17, #19)
  • fix memory leak
  • add separable CPU version
  • decrease verbosity
• generate PSF kernels
• fix prc trimming/upsampling bug (#17)
• return file path in imsmooth (#17)
• fix multiarch CUDA support
• improve sitk error handling
• add tests
  • improc CUDA extension (conv & nlm)
  • performance tests (conv & nlm)
• misc build & test framework updates (#17)

- Python
Published by amypad-bot over 4 years ago

nimpa - nimpa v2.1.0 stable

• add N-dimensional conv_separable() GPU (fallback: CPU) function (#15)
• use https://github.com/AMYPAD/cuvec instead of numpy arrays (avoids all unnecessary memory copies) (#16)
  • allow arbitrary 3D input dimensions (auto-pad)
  • add tests
  • fix alloc bug (cuvec>2.1.2, https://github.com/python/cpython/pull/24283)
• build updates
  • ensure can still build without CUDA
  • cmake: allow linking shared libs for external builds
• framework: misc test & build updates (#15, #14, #13)
  • fix cuda compute capability>=3.5 auto-detection
• misc minor metadata updates

- Python
Published by amypad-bot about 5 years ago

nimpa - nimpa v2.0.0 stable

Features

• fix & upgrade logging
• fix & update dependencies
• add [plot] extra
• use AMYPAD/SPM12 for MATLAB engine & SPM12 support (#6)

Installation/build framework

• drop Python 2 compatibility
• support Python3.6+
  • drop py<=3.5 which are unsupported by ninst<-miutil[cuda]<-pynvml and no longer receive security fixes anyway
• fix conda install
• allow non-interactive installation (#1)
  • allow setting PATHTOOLS from env vars (#1)
• new build framework (#9, #11, #12)
  • cmake/cuda build overhaul
  • allows pip install nimpa on a completely clean system (no numpy, no miutil[cuda], no -e, no --no-binary :all:)
  • replace dinf module => miutil.cuinfo (#7)
  • rely on numpy, miutil[cuda], ninst, scikit-build, cmake>=3.18, ninja
  • all auto-installed at setup-time!
  • get rid of cudasetup.py
  • get rid of install_tools.py
  • get rid of resources.py
  • use new CMAKE_CUDA_ARCHITECTURES policy
  • use new project LANGUAGES specification
  • support python setup.py clean
• basic code tidy (particularly import ordering)
• update .gitignore, .mailmap, README.rst badges

- Python
Published by casperdcl about 5 years ago

nimpa - v1-final stable

Last Python2 version

- Python
Published by casperdcl about 5 years ago