fqfa - 1.3.1

Support mypy type checking by adding a py.typed file.

Scientific Software - Peer-reviewed - Python
Published by afrubin about 2 years ago

fqfa - 1.3.0

• Improve performance of fastqread
• Add mypy type checking and various minor development environment changes

Scientific Software - Peer-reviewed - Python
Published by afrubin over 2 years ago

fqfa - 1.2.3

Fixed an error with the packaging that resulted in empty packages being generated.

Scientific Software - Peer-reviewed - Python
Published by afrubin about 3 years ago

fqfa - 1.2.2

Reorganized the project internal structure and modernized the development workflow. The project now uses pyproject.toml, has pre-commit hooks, and GitHub actions for continuous integration.

Scientific Software - Peer-reviewed - Python
Published by afrubin about 3 years ago

fqfa - 1.2.1

infer_sequence_type will now infer that a sequence is a protein sequence instead of a DNA sequence containing ambiguity characters in cases when both are possible.

Scientific Software - Peer-reviewed - Python
Published by afrubin about 5 years ago

fqfa - 1.2.0

• Added new functions to infer the type of a sequence (DNA, RNA, protein).
• Improved package imports. For example, from fqfa import parse_fasta_records will work now.
• Updated CI settings to fix coveralls.io showing 0% coverage.

Scientific Software - Peer-reviewed - Python
Published by afrubin about 5 years ago

fqfa - 1.1.0

• Add support for ambiguous amino acid codes (Glx, Asx, Xaa)

• Updated benchmarks to reflect performance improvements in pyfastx.

Scientific Software - Peer-reviewed - Python
Published by afrubin over 5 years ago

fqfa - 1.0.0a

Paper updates

Scientific Software - Peer-reviewed - Python
Published by afrubin almost 6 years ago

fqfa - 1.0.0

Publication release

Major

• Performance benchmarking added to the documentation, including comparison with pyfastx

Scientific Software - Peer-reviewed - Python
Published by afrubin almost 6 years ago

fqfa - 0.0.2

Major

• Substantial improvements to the documentation, including usage examples
• Added a function for writing FASTA records
• Added code of conduct

Scientific Software - Peer-reviewed - Python
Published by afrubin about 6 years ago

fqfa - 0.0.1

Initial release.

Scientific Software - Peer-reviewed - Python
Published by afrubin about 6 years ago