abmame
A package built off of the abmAnimalMovement package, with additional features for movement barriers
Science Score: 49.0%
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○Scientific vocabulary similarity
Low similarity (11.2%) to scientific vocabulary
Repository
A package built off of the abmAnimalMovement package, with additional features for movement barriers
Basic Info
- Host: GitHub
- Owner: margaret-swift
- License: gpl-3.0
- Language: C++
- Default Branch: main
- Size: 233 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
abmAME
abmAME, or "abmAnimalMovementExtension" extends the abmAnimalMovement package functionality to include: - Introduction of linear barriers (e.g. fences, roads, rivers) with a perceived permeability for the species/sex/individual being modeled. - Extension of matrix-based landscapes to include real-world georeferenced rasters in simulated agent step choices. - [TODO] Hierarchical expansion of shelter use to define both local and global movement restrictions. - [TODO] Seasonal-based selection of landscape rasters and shelter attraction strength in agent movement choices.
The abmAnimalMovement package simulates animal movement use a discrete time agent-based model, programmed in C++ via the Rcpp package. The simulations include a number of key internal and external movement influences, as well as parameters for navigation and mobility capacity of the animal.
A more complete description of the package, alongside a demonstration can be found at DOI: TBC. Or a draft version of that manuscript within the package Github here.
Installation
Install the fencing extension to the abmAnimalMovement package
To install this package:
install.packages("devtools")
devtools::install_github("margaret-swift/abmAME")
Installation of abmAnimalMovement
Install from CRAN
To install abmAnimalMovement from CRAN:
``` install.packages("abmAnimalMovement")
```
Install with GitHub
To install the development versions of the abmAnimalMovement package from GitHub, use the install_github function from the devtools library.
install.packages("devtools")
devtools::install_github("BenMMarshall/abmAnimalMovement")
Core simulation function
The abm_simulate() function is the main purpose of the package. Guidance on how to parametrise the simulation can be found in accompanying documentation; however, a more detailed walk-through can be found in the preprint COMING SOON. <!-- add link here when ready -->
Owner
- Name: Margaret Swift
- Login: margaret-swift
- Kind: user
- Location: Durham, NC
- Company: Duke University
- Website: www.maggie.earth
- Twitter: ecomargoswift
- Repositories: 2
- Profile: https://github.com/margaret-swift
ecology PhD candidate at Duke University