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Recent Releases of lmas

lmas - Release V 2.0.8

What's Changed

  • update to main by @cimendes in https://github.com/B-UMMI/LMAS/pull/15
  • update dev with main by @cimendes in https://github.com/B-UMMI/LMAS/pull/29
  • Add script to pre-download all images before LMAS execution by @cimendes in https://github.com/B-UMMI/LMAS/pull/31
  • Add StrainXpress to short-read assembly workflow by @cimendes in https://github.com/B-UMMI/LMAS/pull/32

Full Changelog: https://github.com/B-UMMI/LMAS/compare/v.2.0.7...v.2.0.8

- Python
Published by cimendes over 3 years ago

lmas - Release V 2.0.7

What's Changed

  • add number of snps to per reference table data by @cimendes in https://github.com/B-UMMI/LMAS/pull/30

Full Changelog: https://github.com/B-UMMI/LMAS/compare/v.2.0.6...v.2.0.7

- Python
Published by cimendes almost 4 years ago

lmas - Release V 2.0.6

What's Changed

  • Fix bug - empty performance table by @cimendes in https://github.com/B-UMMI/LMAS/pull/28

Full Changelog: https://github.com/B-UMMI/LMAS/compare/v.2.0.5...v.2.0.6

- Python
Published by cimendes almost 4 years ago

lmas - Release V 2.0.5

What's Changed

  • [Patch fix] - Gap and SPN plots by @cimendes in https://github.com/B-UMMI/LMAS/pull/27

Full Changelog: https://github.com/B-UMMI/LMAS/compare/v.2.0.4...v.2.0.5

- Python
Published by cimendes almost 4 years ago

lmas - Release V 2.0.4

What's Changed

  • patch fix - Unknown method invocation by @cimendes in https://github.com/B-UMMI/LMAS/pull/26

Full Changelog: https://github.com/B-UMMI/LMAS/compare/v.2.0.3...v.2.0.4

- Python
Published by cimendes almost 4 years ago

lmas - Release V 2.0.3

What's Changed

  • Update ci with singularity test by @cimendes in https://github.com/B-UMMI/LMAS/pull/23
  • Change defaults on assembly parameters by @cimendes in https://github.com/B-UMMI/LMAS/pull/24
  • remove BCALM2 from workflow by @cimendes in https://github.com/B-UMMI/LMAS/pull/25

Full Changelog: https://github.com/B-UMMI/LMAS/compare/v.2.0.2...v.2.0.3

- Python
Published by cimendes almost 4 years ago

lmas - Release V 2.0.2

LMAS is now available on Bioconda 🎉 🎉 Many thanks to @rpetit3

What's Changed

  • Update docs to include Bioconda installation option by @cimendes in https://github.com/B-UMMI/LMAS/pull/20

Full Changelog: https://github.com/B-UMMI/LMAS/compare/v.2.0.1...v.2.0.2

- Python
Published by cimendes about 4 years ago

lmas - Release V 2.0.1

Minor bug fix. LMAS version can now be called with LMAS --version

Full Changelog: https://github.com/B-UMMI/LMAS/compare/v.2.0.0...v.2.0.1

- Python
Published by cimendes about 4 years ago

lmas - Release V 2.0.0

LMAS is now Nextflow DSL2! 🎇

What's Changed

  • update to main by @cimendes in https://github.com/B-UMMI/LMAS/pull/17
  • LMAS 2.0.0: Update to DSL2 by @cimendes in https://github.com/B-UMMI/LMAS/pull/18

Full Changelog: https://github.com/B-UMMI/LMAS/compare/v1.1.1...v.2.0.0

- Python
Published by cimendes over 4 years ago

lmas - Release V 1.1.3

Minor change: - When an assembler is skipped, it's no longer displayed in the LMAS report as having failed. Instead, the assembler is omitted. - Fixed bug where AbySS and MetaHipmer2 assembler were not being displayed in LMAS report when the assembly failed. - Updated README

- Python
Published by cimendes over 4 years ago

lmas - Release V 1.1.2

Main changes to LMAS: - LMAS now integrates CI - Resources can be limited through the --cpu, --memory, --time, --max_cpu, --max_memory and --max_time parametes - Fixed bug where LMAS folders were not being mounted in docker and singularity correctly - Fixed bug when calculating the percentage of mapped reads

- Python
Published by cimendes over 4 years ago

lmas - Release V 1.1.0

Main changes to LMAS: - Added ABySS and MetaHipMer2 assemblers - Updated SPAdes, metaSPAdes, minia, Unicycer and SKESA assemblers - Added option to toggle the execution of an assembly processes - Made all dockerfiles available in the repository - Added option to toggle assembly processes - Added option to display L, NA and NG plots in log scale - Added number of misassembly events to global and per reference metrics - Fixed issues when calculating identity and COMPASS metrics

- Python
Published by cimendes over 4 years ago

lmas - Release V 1.0.0

The first stable release of LMAS - Last (Meta)Genomic Assembler Standing.

- Python
Published by cimendes almost 5 years ago