jupyterlab-haddock3-configurator
Jupter Lab extension to create/edit haddock3 configuratiion file
https://github.com/i-vresse/jupyterlab-haddock3-configurator
Science Score: 67.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (13.4%) to scientific vocabulary
Repository
Jupter Lab extension to create/edit haddock3 configuratiion file
Basic Info
- Host: GitHub
- Owner: i-VRESSE
- License: apache-2.0
- Language: TypeScript
- Default Branch: main
- Homepage: https://i-vresse.github.io/jupyterlab-haddock3-configurator/
- Size: 1.37 MB
Statistics
- Stars: 0
- Watchers: 5
- Forks: 0
- Open Issues: 2
- Releases: 2
Metadata Files
README.md
haddock3_configurator
Edit haddock3 config file in Jupyter Lab.
Features:
- Create a new haddock3 config file from the Jupyter Lab launcher
- Open a haddock3 config file, edit it and save it
Quirks:
- To save press save button followed by CTRL-s

See running in JupyterLite at https://i-vresse.github.io/jupyterlab-haddock3-configurator/.
Requirements
- JupyterLab >= 3.0
Install
To install the extension, execute:
bash
pip install https://github.com/i-VRESSE/jupyterlab-haddock3-configurator/releases/download/v0.1.1/haddock3_configurator-0.1.1-py3-none-any.whl
Uninstall
To remove the extension, execute:
bash
pip uninstall haddock3_configurator
Usage
To open haddock3 configurator widget
- In launcher
- Click on
Haddock3 configin other category
Contributing
Development install
Note: You will need NodeJS to build the extension package.
The jlpm command is JupyterLab's pinned version of
yarn that is installed with JupyterLab. You may use
yarn or npm in lieu of jlpm below.
```bash
Clone the repo to your local environment
Change directory to the haddock3_configurator directory
Install package in development mode
pip install jupyterlab pip install -e .
Link your development version of the extension with JupyterLab
jupyter labextension develop . --overwrite
@i-vresse/wb-form needs @rjsf/core" "^4.2.2
@jupyterlab/ui-components needs @rjsf/core" "^3.1.0"
This gives Typescript conflig so drop older d.ts file
vite defers import.meta.url till runtime, but webpack gives build error so create dummy files
jlpm prepare:dev
You might need to re-run pip install again
Rebuild extension Typescript source after making changes
jlpm build ```
You can watch the source directory and run JupyterLab at the same time in different terminals to watch for changes in the extension's source and automatically rebuild the extension.
```bash
Watch the source directory in one terminal, automatically rebuilding when needed
jlpm watch
Run JupyterLab in another terminal
jupyter lab ```
With the watch command running, every saved change will immediately be built locally and available in your running JupyterLab. Refresh JupyterLab to load the change in your browser (you may need to wait several seconds for the extension to be rebuilt).
By default, the jlpm build command generates the source maps for this extension to make it easier to debug using the browser dev tools. To also generate source maps for the JupyterLab core extensions, you can run the following command:
bash
jupyter lab build --minimize=False
Development uninstall
bash
pip uninstall haddock3_configurator
In development mode, you will also need to remove the symlink created by jupyter labextension develop
command. To find its location, you can run jupyter labextension list to figure out where the labextensions
folder is located. Then you can remove the symlink named jupyterlab-haddock3-configurator within that folder.
Testing the extension
Frontend tests
This extension is using Jest for JavaScript code testing.
To execute them, execute:
sh
jlpm
jlpm test
Integration tests
This extension uses Playwright for the integration tests (aka user level tests). More precisely, the JupyterLab helper Galata is used to handle testing the extension in JupyterLab.
More information are provided within the ui-tests README.
Packaging the extension
See RELEASE
Owner
- Name: Interactive Virtual Research Environment for Scientific Software Execution
- Login: i-VRESSE
- Kind: organization
- Repositories: 5
- Profile: https://github.com/i-VRESSE
Project with Netherlands eScience Center and Bonvin Lab
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: i-VRESSE jupyterlab haddock3 configurator
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Stefan
family-names: Verhoeven
affiliation: Netherlands eScience Center
orcid: 'https://orcid.org/0000-0002-5821-2060'
repository-code: 'https://github.com/i-VRESSE/jupyterlab-haddock3-configurator'
abstract: >-
Jupter Lab extension to create/edit haddock3 configuration file.
license: Apache-2.0
identifiers:
- type: doi
value: 10.5281/zenodo.7034466
description: >-
This DOI represents all versions, and will
always resolve to the latest one.
GitHub Events
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Dependencies
- @babel/core ^7.0.0 development
- @babel/preset-env ^7.0.0 development
- @jupyterlab/builder ^3.1.0 development
- @jupyterlab/testutils ^3.0.0 development
- @types/jest ^26.0.0 development
- @types/react ^17.0.47 development
- @typescript-eslint/eslint-plugin ^4.8.1 development
- @typescript-eslint/parser ^4.8.1 development
- eslint ^7.14.0 development
- eslint-config-prettier ^6.15.0 development
- eslint-plugin-prettier ^3.1.4 development
- jest ^26.0.0 development
- npm-run-all ^4.1.5 development
- prettier ^2.1.1 development
- rimraf ^3.0.2 development
- stylelint ^14.3.0 development
- stylelint-config-prettier ^9.0.3 development
- stylelint-config-recommended ^6.0.0 development
- stylelint-config-standard ~24.0.0 development
- stylelint-prettier ^2.0.0 development
- ts-jest ^26.0.0 development
- typescript ~4.1.3 development
- @i-vresse/wb-core ^1.1.1
- @jupyterlab/application ^3.4.4
- @jupyterlab/apputils ^3.4.4
- @jupyterlab/docregistry ^3.4.4
- @jupyterlab/filebrowser ^3.4.4
- @jupyterlab/launcher ^3.4.4
- @jupyterlab/settingregistry ^3.1.0
- @jupyterlab/galata ^4.3.0 development
- 1350 dependencies
- actions/github-script v3 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/download-artifact v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v2 composite
- jupyterlab/maintainer-tools/.github/actions/base-setup v1 composite
- actions/cache v1 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/setup-node v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v2 composite
- jupyter-server/jupyter_releaser/.github/actions/check-release v1 composite
- actions/checkout v2 composite
- actions/deploy-pages main composite
- actions/download-artifact v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v2 composite
- actions/upload-pages-artifact v1 composite
- jupyterlab/maintainer-tools/.github/actions/base-setup v1 composite
- actions/checkout v2 composite
- jupyterlab/maintainer-tools/.github/actions/update-snapshots v1 composite
- ipywidgets >=7.7,<8
- jupyterlab *
- jupyterlite ==0.1.0b12
- theme-darcula *