Data

Tools

Indexes

Applications

Experiments

Open Source Science

sfa

The Sap Flow Analyzer (SFA) is an R Shiny App to process sap flow data recorded with Heat Field Deformation (HFD) instruments. The app allows to clean the data, determine k-values, calculate sap flow per section and density as well as to estimate sap flow rates and tree water use.

https://github.com/mcwimm/sfa

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.1%) to scientific vocabulary

Keywords

ecology sapflow shiny-r transpiration trees
Last synced: 6 months ago · JSON representation ·

Repository

The Sap Flow Analyzer (SFA) is an R Shiny App to process sap flow data recorded with Heat Field Deformation (HFD) instruments. The app allows to clean the data, determine k-values, calculate sap flow per section and density as well as to estimate sap flow rates and tree water use.

Basic Info
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 2
  • Open Issues: 1
  • Releases: 6
Topics
ecology sapflow shiny-r transpiration trees
Created over 5 years ago · Last pushed over 1 year ago
Metadata Files
Readme License Citation

readMe.md

Sap Flow Analyzer

The Sap Flow Analyzer (SFA) is an R Shiny App to process sap flow data recorded with Heat Field Deformation (HFD) instruments. The app allows to clean the data, determine k-values, calculate sap flow per section and density as well as to estimate sap flow rates and tree water use. A detailed description of the methodology can be found in Wimmler et al. (in prep.).

User Guide

Go to SFA User Guide

Launch the App

Requirements

Option 1

Run the following lines in R to use the latest version of the app

if(!require("shiny")) install.packages("shiny") runGitHub(repo = "SFA", username = "mcwimm", destdir = NULL)

Note This option will download and open the application directly from the github repository. This means that each time you run this command, the application will be freshly downloaded to your computer.

Option 2

  • Clone or download the complete project (repo) manually
  • RStudio: open ui.R and click Run App
  • Command line: R -e "shiny::runApp('~/shinyapp')"

For more information visit our User Guide or the Shiny Webpage.

Owner

  • Login: mcwimm
  • Kind: user

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Wimmler"
  given-names: "Marie-Christin"
  orcid: "https://orcid.org/0000-0002-4542-6764"
- family-names: "Vovides"
  given-names: "Alejandra G."
  orcid: "https://orcid.org/0000-0002-3293-5770"
- family-names: "Bowen"
  given-names: "Hannah"
- family-names: "Nadezhdina"
  given-names: "Nadezhda"
title: "Sap Flow Analyzer (SFA): an R Shiny tool for processing heat field deformation measurements"
version: 0.3.2
doi: 10.5281/zenodo.12755349
date-released: 2024-06
url: "https://github.com/mcwimm/SFA"

GitHub Events

Total
  • Issues event: 1
Last Year
  • Issues event: 1