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bam-to-fastq-qc

Conversion of files from BAM to FASTQ, including FASTQC & CCS.BAM file quality control (QC) steps.

https://github.com/australianbiocommons/bam-to-fastq-qc

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.2%) to scientific vocabulary

Keywords

workflow
Last synced: 10 months ago · JSON representation ·

Repository

Conversion of files from BAM to FASTQ, including FASTQC & CCS.BAM file quality control (QC) steps.

Basic Info
  • Host: GitHub
  • Owner: AustralianBioCommons
  • License: other
  • Default Branch: main
  • Homepage:
  • Size: 8.79 KB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Topics
workflow
Created almost 4 years ago · Last pushed over 3 years ago
Metadata Files
Readme Changelog License Citation

README.md

BAM-to-FASTQ-QC

General recommendations for using BAM-to-FASTQ-QC

Please see the Genome assembly with hifiasm on Galaxy Australia guide.

Acknowledgements

The workflow & the doc_guidelines template used are supported by the Australian BioCommons via Bioplatforms Australia funding, the Australian Research Data Commons (https://doi.org/10.47486/PL105) and the Queensland Government RICF programme. Bioplatforms Australia and the Australian Research Data Commons are enabled by the National Collaborative Research Infrastructure Strategy (NCRIS).

Owner

  • Name: AustralianBioCommons
  • Login: AustralianBioCommons
  • Kind: organization
  • Email: systems@biocommons.org.au

Documentation for the development, deployment and/or optimisation of key community-endorsed bioinformatics tools and workflows

Citation (CITATION.cff) 

cff-version: 1.0.0
message: "If you use this workflow, please cite it as below."
authors:
  - family-names: "Price"
    given-names: "Gareth"
    orcid: "https://orcid.org/0000-0003-2439-8650"
title: "BAM-to-FASTQ-QC"
version: 1.0.0
doi: [DOI goes here]
date-released: 2022-09-19

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