hande

HE GUI

https://github.com/wehi-labatlab/hande

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
Found CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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Academic email domains
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (8.0%) to scientific vocabulary

Last synced: 10 months ago · JSON representation ·

Repository

HE GUI

Basic Info

Host: GitHub
Owner: WEHI-labatlab
License: gpl-3.0
Language: Python
Default Branch: main
Size: 3.3 MB

Statistics

Stars: 1
Watchers: 2
Forks: 1
Open Issues: 6
Releases: 0

Created over 4 years ago · Last pushed over 3 years ago

Metadata Files

Readme License Citation

README.md

MIBI scanning GUI

Aim

The aim of this project is to assist MIBI operators with field of view (FoV) selection based on reference images.

Software Requirements

You can run HE_GUI from the command line using Python 3.8 plus all required libraries (see environment.yml).

However, it's more convenient to use Miniconda - a small bootstrap version of Anaconda - instead.

If you have not installed Miniconda for Python 3.8 yet, you can find it here:

https://docs.conda.io/en/latest/miniconda.html?highlight=3.8#windows-installers

Installation with Miniconda

Copy this repository onto your local device (extract the ZIP archive if necessary) and navigate to the HE_GUI folder using the Anaconda command prompt.

Run Miniconda from the Start Menu and create a new environment for heGUI: conda env create -n heGUI -f environment.yml Now run heGUI using the newly created Anaconda environment: ```

Windows

conda run -n heGUI python .\heGUI\main.pyw

MacOS, Linux

chmod a+x ./heGUI/main.pyw conda run -n "heGUI" ./heGUI/main.pyw ```

Owner

Name: Labat Lab WEHI
Login: WEHI-labatlab
Kind: organization
Location: Australia

Repositories: 1
Profile: https://github.com/WEHI-labatlab

Personalised Oncology Division

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Yokote"
  given-names: "Kenta"
  orcid: "https://orcid.org/0000-0002-0817-7076"
- family-names: "Nina"
  given-names: "Tubau"
  orcid: ""
- family-names: "Rickert"
  given-names: "Christian"
  ordic: ""
title: "HandE"
version: 1.0.0
doi: 
date-released: 
url: "https://github.com/WEHI-labatlab/HE_GUI"

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