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refinebio-examples

Example workflows for refine.bio data

https://github.com/alexslemonade/refinebio-examples

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.4%) to scientific vocabulary

Keywords

biodata differential-expression gene-expression notebook pathway-analysis
Last synced: 6 months ago · JSON representation ·

Repository

Example workflows for refine.bio data

Basic Info
  • Host: GitHub
  • Owner: AlexsLemonade
  • License: other
  • Language: HTML
  • Default Branch: staging
  • Homepage: https://www.refine.bio
  • Size: 783 MB
Statistics
  • Stars: 11
  • Watchers: 7
  • Forks: 6
  • Open Issues: 33
  • Releases: 2
Topics
biodata differential-expression gene-expression notebook pathway-analysis
Created over 7 years ago · Last pushed about 1 year ago
Metadata Files
Readme Contributing License Citation

README.md

refinebio-examples

This repository contains example workflows of how to use data downloaded from refine.bio.

Go to the Getting Started Section

Owner

  • Name: Alex's Lemonade Stand Foundation
  • Login: AlexsLemonade
  • Kind: organization

Childhood Cancer Data Lab of ALSF

Citation (CITATION.cff) 

cff-version: 1.1.0
authors:
  - family-names: Savonen
    given-names: Candace L.
    orcid: https://orcid.org/0000-0001-6331-7070
  - family-names: Shapiro
    given-names: Joshua A.
    orcid: https://orcid.org/0000-0002-6224-0347
  - family-names: Bethell
    given-names: Chante J.
    orcid: https://orcid.org/0000-0001-9653-8128
  - family-names: Mejia
    given-names: David S.
    orcid: https://orcid.org/0000-0003-1679-0353
  - family-names: Venkatesh Prasad
    given-names: Deepashree
    orcid: https://orcid.org/0000-0001-5756-4083
  - family-names: Taroni
    given-names: Jaclyn N.
    orcid: https://orcid.org/0000-0003-4734-4508
title: "refine.bio examples"
version: v2.0
date-released: 2021-08-03

GitHub Events

Total
  • Issues event: 2
  • Delete event: 1
  • Issue comment event: 7
  • Push event: 2
  • Pull request review event: 1
  • Pull request event: 4
  • Create event: 1
Last Year
  • Issues event: 2
  • Delete event: 1
  • Issue comment event: 7
  • Push event: 2
  • Pull request review event: 1
  • Pull request event: 4
  • Create event: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 1
  • Total pull requests: 2
  • Average time to close issues: about 23 hours
  • Average time to close pull requests: about 1 hour
  • Total issue authors: 1
  • Total pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 2.5
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 2
  • Average time to close issues: about 23 hours
  • Average time to close pull requests: about 1 hour
  • Issue authors: 1
  • Pull request authors: 2
  • Average comments per issue: 0.0
  • Average comments per pull request: 2.5
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • sjspielman (1)
Pull Request Authors
  • jashapiro (1)
  • sjspielman (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

.github/workflows/check-frontend-urls.yml actions
  • actions/checkout v3 composite
.github/workflows/docker-build-push.yml actions
  • 1password/load-secrets-action v1 composite
  • actions/checkout v3 composite
  • docker/build-push-action v4 composite
  • docker/login-action v2 composite
  • docker/setup-buildx-action v2 composite
  • ravsamhq/notify-slack-action v2 composite
.github/workflows/docker-build.yml actions
  • 1password/load-secrets-action v1 composite
  • actions/checkout v3 composite
  • docker/build-push-action v4 composite
  • docker/setup-buildx-action v2 composite
  • ravsamhq/notify-slack-action v2 composite
.github/workflows/style-and-sp-check.yml actions
  • 1password/load-secrets-action v1 composite
  • actions/checkout v4 composite
  • actions/upload-artifact v4 composite
docker/Dockerfile docker
  • rocker/tidyverse 4.0.5 build