homogenisation-richness
Research project aggregating biodiversity data from checklists. Child project from chase-lab/homogenisation and brother project of chase-lab/metacommunity-surveys and chase-lab/checklist_change. `Richness` project aggregates data from studies that provided only average richness values at the alpha scale and a richness value at the gamma scale.
Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (9.2%) to scientific vocabulary
Repository
Research project aggregating biodiversity data from checklists. Child project from chase-lab/homogenisation and brother project of chase-lab/metacommunity-surveys and chase-lab/checklist_change. `Richness` project aggregates data from studies that provided only average richness values at the alpha scale and a richness value at the gamma scale.
Basic Info
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- Releases: 3
Metadata Files
README.md
homogenisation-richness
Research project aggregating biodiversity data from checklists. Richness project aggregates data from studies that provided only average richness values at the alpha scale and a richness value at the gamma scale.
Description
This research compendium regroups scripts used to download, re-structure and aggregate data sets to constitute a large meta-analysis of communities sampled at least twice, 10 years apart or more. It is related to projects chase-lab/metacommunity-surveys and chase-lab/checklist_change.
Data
Raw and aggregated data tables are provided. Aggregated data are in ./data/communities.csv and ./data/metadata.csv and column definitions are given in ./data/definitionscommunities.txt and ./data/definitionsmetadata.txt.
Reproducibility and R environment
To ensure reproducibility, the working environment (R version and package version) were documented and isolated using the package renv (https://rstudio.github.io/renv/index.html). By running renv::restore(), renv will install all missing packages at once. This function will use the renv.lock file to download the same versions of packages that we used and install them on your system.
After downloading or cloning this repository, run these scripts in order to wrangle raw data and merge all data sets into one long table.
renv::restore()
source('./R/1.0_wrangling_raw_data.r')
source('./R/2.0_merging_long-format_tables')
Owner
- Name: chase-lab
- Login: chase-lab
- Kind: organization
- Repositories: 4
- Profile: https://github.com/chase-lab
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use these data, please cite as below."
authors:
- family-names: Alban
given-names: Sagouis
orcid: https://orcid.org/0000-0002-3827-1063
- family-names: Shane
given-names: Blowes
orcid: https://orcid.org/0000-0001-6310-3670
- family-names: Jonathan
given-names: Chase
orcid: https://orcid.org/0000-0001-5580-4303
- family-names: Wubing
given-names: Xu
orcid: https://orcid.org/0000-0002-6566-4452
title: "chase-lab/homogenisation-richness - Homogenisation-Richness data for 'Synthesis reveals approximately balanced biotic differentiation and homogenization'"
version: v1.0
date-released: 2024-01-01